Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N14
         (1184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    27   3.9  
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    27   6.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   8.9  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +2

Query: 125 DYQSNLLIMSNDYGFNSDDSP---NKTNSHLQLPSPIITRRNRTASTSE 262
           D+ S L   S+++   +  SP    KTN   +LPS +  +  RT   S+
Sbjct: 552 DHHSPLATSSSEHEMEATPSPALLKKTNKRRELPSSLTKKNTRTPQRSK 600


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
 Frame = +1

Query: 421 ISTLPNPT*VRKISSCPCAHN-----SSHSGETRQVGRTTSVTIKNPRYVT 558
           I+T+ NP  V  ISS P  H      ++H+G T   GR T     N  Y+T
Sbjct: 68  IATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTN--YIT 116


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +2

Query: 50  DVTDILFSFAC*ISSFLTYLLPILDDYQSNLLIMSNDYGFNSDDSPNKTNSHLQL 214
           DV  I   +AC     L Y+L +LD    +LL+ S        D+    N H+ L
Sbjct: 771 DVGSIRLQYAC-----LQYMLAVLDGLNIDLLLYSRILSSKVRDNLQNNNLHVYL 820


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,483,970
Number of Sequences: 5004
Number of extensions: 94886
Number of successful extensions: 213
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 637498240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)