Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_N14
(1184 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0202 - 1638978-1639571 41 0.002
02_01_0158 - 1103461-1104186 39 0.009
01_06_1842 - 40278875-40280131 30 3.1
01_06_0433 - 29311749-29311859,29311958-29312116,29312208-293123... 29 5.4
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993 29 9.4
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 29 9.4
03_06_0109 - 31717691-31718311,31719110-31719223,31719316-317196... 29 9.4
03_02_0528 + 9189215-9189330,9190111-9190204,9190654-9190743,919... 29 9.4
>08_01_0202 - 1638978-1639571
Length = 197
Score = 40.7 bits (91), Expect = 0.002
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +2
Query: 290 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE-YVPLPGDEVI 421
G +K F KG GF+ P+ GGED+F+H S ++ + Y L +V+
Sbjct: 8 GTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSDGYRSLNDGDVV 52
>02_01_0158 - 1103461-1104186
Length = 241
Score = 38.7 bits (86), Expect = 0.009
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 290 GKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGE 391
G +K F KG GF+ P+ G ED+F+H S I+ +
Sbjct: 9 GTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD 42
>01_06_1842 - 40278875-40280131
Length = 418
Score = 30.3 bits (65), Expect = 3.1
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 424 STLPNPT*VRKISSCPCAHNSSHSGETRQVGRTTSV 531
+T P P RK+SS PC+ ++S GET S+
Sbjct: 230 ATAPGPAPARKVSSAPCSRSNSR-GETSAAAPPPSI 264
>01_06_0433 -
29311749-29311859,29311958-29312116,29312208-29312315,
29312449-29312531,29312617-29312786,29312833-29312903,
29313170-29313302,29313483-29313749,29313865-29313969,
29314053-29314144,29314263-29314363,29314426-29314552,
29315025-29315140,29315222-29315291,29315476-29315685
Length = 640
Score = 29.5 bits (63), Expect = 5.4
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -2
Query: 466 SLKFFELRWDWAKSIYNFI-TRQGYIFTFDIRYMEKYIFAPFFRFHKSVTFLSAERLDFT 290
+LK+F+ W IY++ T+ F+F + +++F P +V L+ + +DF
Sbjct: 187 ALKWFDFTWQPIDEIYSYFGTKIAIYFSF-LGMYTRWLFFP------AVFGLATQLIDFG 239
Query: 289 SFQWI 275
S QW+
Sbjct: 240 SLQWL 244
>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
Length = 1125
Score = 28.7 bits (61), Expect = 9.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 425 RLCPIPPKFEKFQAVHVRIIHLTPEKHVKWDEPPL*QLRTLDM 553
R+ +P + +K + + + + T + + W+ L QLRTLD+
Sbjct: 712 RITKLPQEIQKLKQLEILYVRSTGIEELPWEIGELKQLRTLDV 754
>11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 28.7 bits (61), Expect = 9.4
Identities = 31/110 (28%), Positives = 42/110 (38%), Gaps = 7/110 (6%)
Frame = +2
Query: 92 SFLTYLLPILDDYQSNLL------IMSNDYGFNSDDSPNKTNSHLQLPSPIITRRNRTAS 253
S L YLL + D + NLL I+ D+GF +SP N +P R
Sbjct: 993 SILCYLLQVKDRHNGNLLIDEEGHIIHIDFGFMLSNSPGGVNFE---SAPFKLTRELLEV 1049
Query: 254 TSERALGNPLE-TGKIKTFCREKGHGFVKPEKGGEDIFLHISDIEGEYVP 400
A G P E K C + GF+ K E I L + ++ P
Sbjct: 1050 MDSDAEGTPSEFFDYFKVLCIQ---GFLTCRKHAERIILLVEMLQDSGFP 1096
>03_06_0109 -
31717691-31718311,31719110-31719223,31719316-31719606,
31719698-31720006,31720098-31720865
Length = 700
Score = 28.7 bits (61), Expect = 9.4
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 3/74 (4%)
Frame = -2
Query: 508 DVFLRSEMNYAHMDSLKFFELRWDWAKSIYNFITRQGYI---FTFDIRYMEKYIFAPFFR 338
D R+ ++ D L + RW + N +TR I F F++ IF FF
Sbjct: 349 DFLKRTVPHFKDNDELGLVQARWSFVNKDENLLTRLQNINLCFHFEVEQQVNGIFLNFFG 408
Query: 337 FHKSVTFLSAERLD 296
F+ + + LD
Sbjct: 409 FNGTAGVWRIKALD 422
>03_02_0528 +
9189215-9189330,9190111-9190204,9190654-9190743,
9191601-9191717,9192187-9192259,9192335-9192453,
9192569-9192690,9192777-9192953,9193189-9193333,
9193458-9193636,9193742-9193991
Length = 493
Score = 28.7 bits (61), Expect = 9.4
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 377 DIEGEYVPLPGDEV--IYRLCPIPPKFEKFQAVH 472
D EG+ PLPG E+ I+R+ P PP +K+Q H
Sbjct: 338 DQEGD--PLPGTELKEIWRVAPTPPN-DKYQYTH 368
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,963,214
Number of Sequences: 37544
Number of extensions: 543465
Number of successful extensions: 1015
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1014
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3608292120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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