Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_N14
(1184 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 33 0.30
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 33 0.30
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 33 0.30
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 32 0.91
Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical p... 29 4.9
AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical ... 29 4.9
Z81041-1|CAB02786.2| 362|Caenorhabditis elegans Hypothetical pr... 29 6.4
U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein. 29 6.4
AF022981-4|AAG24205.1| 602|Caenorhabditis elegans Hypothetical ... 29 8.5
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.30
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 227 ITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 382
+T R S P G K F KG+GFV + GED+F+H S++
Sbjct: 34 LTENMRVPSFERLPSPTPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.30
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 227 ITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 382
+T R S P G K F KG+GFV + GED+F+H S++
Sbjct: 34 LTENMRVPSFERLPSPTPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 33.5 bits (73), Expect = 0.30
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 227 ITRRNRTASTSERALGNPLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 382
+T R S P G K F KG+GFV + GED+F+H S++
Sbjct: 34 LTENMRVPSFERLPSPTPRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 85
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 31.9 bits (69), Expect = 0.91
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 278 PLETGKIKTFCREKGHGFVKPEKGGEDIFLHISDI 382
P G K F KG+GFV + GED+F+H S++
Sbjct: 20 PRYFGSCKWFNVSKGYGFVIDDITGEDLFVHQSNL 54
>Z66519-14|CAA91377.2| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 29.5 bits (63), Expect = 4.9
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Frame = +2
Query: 68 FSFAC*ISSFLTYLLPILDDYQSNLLIMSNDYGFNSDD----SPNKTNSHLQLPSP--II 229
F ++C S TY++ I D + NL++ + F+ D KT +Q I+
Sbjct: 977 FLYSCVGYSVATYIMGIKDRHSDNLMLTEDGKYFHIDFGHILGHGKTKLGIQRDRQPFIL 1036
Query: 230 TRRNRTASTSERAL-GNPLETGKIKTFCRE 316
T T S +++ GN E K KT C E
Sbjct: 1037 TEHFMTVIRSGKSVDGNSHELQKFKTLCVE 1066
>AL110499-5|CAB57914.1| 1146|Caenorhabditis elegans Hypothetical
protein B0334.8 protein.
Length = 1146
Score = 29.5 bits (63), Expect = 4.9
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Frame = +2
Query: 68 FSFAC*ISSFLTYLLPILDDYQSNLLIMSNDYGFNSDD----SPNKTNSHLQLPSP--II 229
F ++C S TY++ I D + NL++ + F+ D KT +Q I+
Sbjct: 977 FLYSCVGYSVATYIMGIKDRHSDNLMLTEDGKYFHIDFGHILGHGKTKLGIQRDRQPFIL 1036
Query: 230 TRRNRTASTSERAL-GNPLETGKIKTFCRE 316
T T S +++ GN E K KT C E
Sbjct: 1037 TEHFMTVIRSGKSVDGNSHELQKFKTLCVE 1066
>Z81041-1|CAB02786.2| 362|Caenorhabditis elegans Hypothetical
protein C27A7.2 protein.
Length = 362
Score = 29.1 bits (62), Expect = 6.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 547 RYVTFFVLMQGLLPSNYPSYLINLN 621
+Y+ FF L L P NYP+YL N
Sbjct: 206 KYIAFFDLDDILFPLNYPTYLEEFN 230
>U56101-1|AAC47459.1| 1167|Caenorhabditis elegans AGE-1 protein.
Length = 1167
Score = 29.1 bits (62), Expect = 6.4
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Frame = +2
Query: 68 FSFAC*ISSFLTYLLPILDDYQSNLLIMSN------DYGFNSDDSPNKTNSHLQLPSPII 229
F ++C S TY++ I D + NL++ + D+G K I+
Sbjct: 998 FLYSCVGYSVATYIMGIKDRHSDNLMLTEDGKYVHIDFGHILGHGKTKLGIQRDRQPFIL 1057
Query: 230 TRRNRTASTSERAL-GNPLETGKIKTFCRE 316
T T S +++ GN E K KT C E
Sbjct: 1058 TEHFMTVIRSGKSVDGNSHELQKFKTLCVE 1087
>AF022981-4|AAG24205.1| 602|Caenorhabditis elegans Hypothetical
protein W03F9.10 protein.
Length = 602
Score = 28.7 bits (61), Expect = 8.5
Identities = 23/88 (26%), Positives = 41/88 (46%)
Frame = +2
Query: 149 MSNDYGFNSDDSPNKTNSHLQLPSPIITRRNRTASTSERALGNPLETGKIKTFCREKGHG 328
MS + +NSDD NK S +L + R+ + + + + T + + RE+
Sbjct: 1 MSGEDDYNSDDEANKNLSKKELQE--LKRKQQKSKKKKESKKRAKATKQAEIETREEPK- 57
Query: 329 FVKPEKGGEDIFLHISDIEGEYVPLPGD 412
K E+ G+D+ + I D GE + + D
Sbjct: 58 --KEEENGDDLDVEI-DYIGETIEIEPD 82
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,398,460
Number of Sequences: 27780
Number of extensions: 521446
Number of successful extensions: 1260
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1260
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3245116438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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