Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N14
         (1184 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    25   1.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   1.7  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   6.9  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
            releasing hormone-binding protein protein.
          Length = 332

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 979  NLMTFTXXCWHRYYVSIIKHFXMKG 1053
            N +TF   C HR  VSII  + + G
Sbjct: 107  NFITFDIPCEHRGLVSIIDGWELNG 131


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -2

Query: 535 LLQRWFVPLDVFLRSEMNYAHMDSLKFFELRWDWAKSIYNFITRQGYIFTFDIRYMEKYI 356
           L  RW +   VF    ++  H D+  F  +  +   S+Y+   R+    T D  + +KY 
Sbjct: 163 LRTRWSISGTVFDLINIHLFH-DASNFIAM--ETFPSVYSKTRRRALEHTLDRFHNDKYS 219

Query: 355 FAPFFRF 335
             P+F F
Sbjct: 220 NVPYFLF 226


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 831 KPICGAKFWMVLPTSLKLYYVK-W*KKAGHWLTL 929
           K IC A F  + PT++ L  +K + KK G  + L
Sbjct: 100 KRICSALFGKIKPTAIGLSLIKGFDKKQGGGIEL 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 298,571
Number of Sequences: 438
Number of extensions: 6763
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 40367835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)