Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N12
         (1194 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF132144-1|AAD33591.1|  620|Drosophila melanogaster endo/exonucl...    31   4.1  
AE014134-2061|AAF53093.1|  620|Drosophila melanogaster CG16928-P...    31   4.1  
AE014298-2965|AAF45377.1|  738|Drosophila melanogaster CG15322-P...    30   5.4  

>AF132144-1|AAD33591.1|  620|Drosophila melanogaster
           endo/exonuclease Mre11 protein.
          Length = 620

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 705 HTNERCEFNIGDLDEIKKREGITTEDVVQASVMIRNYCKSHAISLDK 845
           +T+E C FN     E+        +DVVQ S +++   K+ A++LDK
Sbjct: 382 YTDESCMFNAIRFGEMLSTRVANVQDVVQFSKVVKR-TKTEAVNLDK 427


>AE014134-2061|AAF53093.1|  620|Drosophila melanogaster CG16928-PA
           protein.
          Length = 620

 Score = 30.7 bits (66), Expect = 4.1
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 705 HTNERCEFNIGDLDEIKKREGITTEDVVQASVMIRNYCKSHAISLDK 845
           +T+E C FN     E+        +DVVQ S +++   K+ A++LDK
Sbjct: 382 YTDESCMFNAIRFGEMLSTRVANVQDVVQFSKVVKR-TKTEAVNLDK 427


>AE014298-2965|AAF45377.1|  738|Drosophila melanogaster CG15322-PA
           protein.
          Length = 738

 Score = 30.3 bits (65), Expect = 5.4
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 573 KRATSRHYEFNMINNPPPKSSYLKACFPTLYPGGFAHAHDQTDTHTNERCEFNIGDLD 746
           ++A  +H+ F+       +S   +  F    P    H H Q+  H +++  FN G+L+
Sbjct: 137 QKAPPQHHRFSFAVPQQVESYQRQVAFKPAAPSTQPHQHSQSHPHQHQQPIFNYGELE 194


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,249,489
Number of Sequences: 53049
Number of extensions: 859266
Number of successful extensions: 2153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2150
length of database: 24,988,368
effective HSP length: 87
effective length of database: 20,373,105
effective search space used: 6315662550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)