Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N11
         (1248 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    28   3.1  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    28   3.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   7.2  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   7.2  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   7.2  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +2

Query: 614 NANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTEVVLAAVYKALNDHHVYLEG 793
           N+N LA+   + + ++++P+  P+  PD   +++   + T    ++      D     E 
Sbjct: 325 NSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEETPEYDSSNSSYAQDSSTIPEK 384

Query: 794 TLLK 805
           TLLK
Sbjct: 385 TLLK 388


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +2

Query: 251 DIGVENTEENRRRYRQLLFSSDAVLSENISGVILFHETLYQKADDXTPLVSLLEKKGIIP 430
           D G+E +E NRR  +  +FS     S ++S     H TL    D  +  V++  + G +P
Sbjct: 494 DSGIEASESNRR--KSDIFSFSGRNSFSVSRPSSSHSTLSYANDSASSAVNVAGETGSLP 551

Query: 431 GIK 439
            ++
Sbjct: 552 PLR 554


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 137 PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 301
           P PE ++E  K+A++   P K   +A ES     K  +++  + +  N   YR L
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -3

Query: 625 NIGVFLDSLVRGGVAANLQHAT 560
           NI +FL SL  GGVA NL  A+
Sbjct: 861 NITIFLVSLKAGGVALNLTEAS 882


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +2

Query: 308 SSDAVLSENISGVILFHETLYQKADDXTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT 487
           S +A    NI GV+    +  ++  + + L +L EK G    I          GSE   +
Sbjct: 349 SYNASFLVNIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSS 399

Query: 488 -TQGLDDLAQRCAQYKKDGCHFAKW 559
            T+   D+A+  A + K+G +F+ W
Sbjct: 400 ITEKTRDIAKNVATWLKNGENFSSW 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,186,312
Number of Sequences: 5004
Number of extensions: 84926
Number of successful extensions: 247
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)