Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N11
         (1248 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    23   4.2  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   9.7  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 761 PYTRRPERPQSPSGRGPGRARHQVRLRARQLAR 663
           P TRR +R  +     P   R +    A QLAR
Sbjct: 2   PRTRRVKRSHNGKNGSPEEKRPRTAFSAEQLAR 34


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = -2

Query: 293 DNDDGSPLCSPRRCPANACPLYRWIRQRPGYP 198
           D   G+P+C       N   L +W   + G+P
Sbjct: 324 DRMQGNPICVQIPWDKNVEALAKWANGQTGFP 355


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/33 (30%), Positives = 13/33 (39%)
 Frame = +2

Query: 794 TLLKPNMVTAGQSCKKTYTPNDVXRATGHXPPP 892
           T +     T   +   T TPN    A+   PPP
Sbjct: 659 TTITTTTTTTTTTTTTTTTPNTTQNASATTPPP 691


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 297,309
Number of Sequences: 438
Number of extensions: 6647
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42622365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)