Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N06
         (1222 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    40   0.13 
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    35   4.9  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 39.9 bits (89), Expect = 0.13
 Identities = 20/37 (54%), Positives = 21/37 (56%)
 Frame = +1

Query: 619 APLTIXKKXXXXVRGGEPQXXYKXTXRFPKEXPXXAL 729
           APLT   K    VRGGE +  YK T RFP E P  AL
Sbjct: 21  APLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCAL 57


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 34.7 bits (76), Expect = 4.9
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +1

Query: 619 APLTIXKKXXXXVRGGEPQXXYKXTXRFPKEXPXXAL 729
           APLT   K    + GGE +  YK T RFP   P  AL
Sbjct: 57  APLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCAL 93


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 454,859,992
Number of Sequences: 1657284
Number of extensions: 3915288
Number of successful extensions: 4356
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4144
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 123604589072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)