Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_N04
(1162 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 326 5e-90
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 314 2e-86
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 33 0.057
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 31 0.23
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 30 0.70
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 29 0.93
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 28 2.2
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p... 28 2.2
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 5.0
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 6.6
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 6.6
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce... 26 8.7
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 326 bits (800), Expect = 5e-90
Identities = 157/236 (66%), Positives = 190/236 (80%), Gaps = 2/236 (0%)
Frame = +2
Query: 188 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSW 367
+ +E+ V AKLAEQAERY+ M MK V T EL+ EERNLLSVAYKNV+GARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 368 RVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVF 541
R++SSIEQK E G+ + ++ KEYR K+E+EL IC D+L +L+KHLIP A++ ESKVF
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 542 YLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVF 721
Y KMKGDYYRYLAE A GE R + S + Y+ A EI+ A++ PTHPIRLGLALNFSVF
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVF 182
Query: 722 YYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 889
YYEILNSPD+AC LAKQAFD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 183 YYEILNSPDRACYLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 238
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 314 bits (771), Expect = 2e-86
Identities = 153/237 (64%), Positives = 188/237 (79%), Gaps = 2/237 (0%)
Frame = +2
Query: 185 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSS 364
MS +E V AKLAEQAERY++M MK+V + +LS EERNLLSVAYKN++GARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 365 WRVISSIEQKTE--GSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKV 538
WR+ISSIEQK E G+ R+ + KEYR K+E EL +IC+DVL +L+KHLIP A+ ESKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 539 FYLKMKGDYYRYLAEVATGETRHSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSV 718
FY KMKGDYYRYLAE GE + S +AY+ A +I+ A++ PT P+RLGLALNFSV
Sbjct: 121 FYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSV 180
Query: 719 FYYEILNSPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDTQ 889
FYYEIL+SP+ AC LAKQ FD+AI+ELD+L+E+SYKDSTLIMQLLRDNLTLWTSD +
Sbjct: 181 FYYEILDSPESACHLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAE 237
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 33.5 bits (73), Expect = 0.057
Identities = 25/104 (24%), Positives = 44/104 (42%)
Frame = +2
Query: 161 ISSLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKN 340
I S+ S S EEL+ R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
Query: 341 VVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVEKELREIC 472
+R+ + +E+ + EY +E+ L++ C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 31.5 bits (68), Expect = 0.23
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 188 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELSNEERN-LLSVAYKNVVGARR 358
SV + ++ K ++ E + ++ + +K V+ ET E+SN+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 359 SSWRVIS 379
S+W S
Sbjct: 62 STWATFS 68
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 29.9 bits (64), Expect = 0.70
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Frame = +2
Query: 317 LLSVAYKNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYR-VKVEKELR-EICYDVLGL 490
L+S +N A RS + + I + S + ++ + YR VK K L +IC+ +
Sbjct: 968 LVSYVRRNAETAERS--QALPFITRNL-ASIKSHELHEAYRLVKANKILEAQICFRSIIY 1024
Query: 491 LDKHLIPKASNPESKVFYLKMKGDYYRYLAEVATG-ETRHSVVEDSQKAYQDAFEISKAK 667
L L A++ E + + RY+ ++ E R ED+++A + ++ + A
Sbjct: 1025 LA--LTTVANSEEEADEISALIDECCRYIVALSCELERRRLGEEDTKRALELSYYFASAD 1082
Query: 668 MQPTHP-IRLGLALNFS 715
+QP H I L LA+N S
Sbjct: 1083 LQPMHSIIALRLAINAS 1099
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 29.5 bits (63), Expect = 0.93
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = +2
Query: 194 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELSNEERNLLSVAYKNVVGARRSSWRV 373
+K+E QR + Q R D M + +G S+ + SV+ + +R S+
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGP--SHAKPRSTSVSSEERSRSRAGSFSH 374
Query: 374 ISSIEQKTEGSE---RKQQMAKEYRVKVEKELR 463
S E + E SE R+Q++ +E R + EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 28.3 bits (60), Expect = 2.2
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Frame = +3
Query: 78 FSAREKLILC-----LNLLVQIHFSPSDKGISELVLFHRPRCPSTRKNWCNVPNWPNKLS 242
FS +E ILC L+L+V + ++ S+ + F +PR K N WPN+ S
Sbjct: 39 FSDKENSILCKQLKELDLVVSSNKEFLNEKTSDQISFLKPRETVVEKKLANGSIWPNETS 98
Query: 243 DM 248
+
Sbjct: 99 HL 100
>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 2.2
Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Frame = +2
Query: 386 EQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPKASNPESKVFYLKM-KGD 562
E E+ Q++A+ Y+V + +LRE YD LG + +P A ++ F+ + GD
Sbjct: 43 ENPEAAREKFQKLAEAYQVLSDPKLRE-KYDKLGKVG--AVPDAGFEDAFEFFKNLFGGD 99
Query: 563 YYR-YLAEVATGETRHSVV--EDSQKAYQDAFEISKAKMQ 673
+R Y+ E+ + ++ E KA +D E SK ++Q
Sbjct: 100 SFRDYVGELNLLKELCKMINEEPELKAIEDT-EESKKQLQ 138
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 5.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 488 LLDKHLIPKASNPESKVFYLKMKGDYYR---YLAEVATGETRHSVVEDS 625
+++K IP++ E+K Y + GD+ +L E A E H V+ D+
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLDT 1656
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 335 KNVVGARRSSWRVISSIEQKTEGSERKQQMAKEYRVKVE 451
KN+ S+ R +SS + K +E + M +Y K+E
Sbjct: 350 KNLENDEESTLRALSSFQSKIRNAEDEDVMDSQYGSKIE 388
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 6.6
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Frame = +2
Query: 194 DKEELVQRAKLAEQA-ERYDDMAAAMK--EVTETGVELSNEERNLLSVAYKNVVGARRSS 364
D ++RA A QA E+ + + +K E+ +L LL V + + R S
Sbjct: 265 DVRSRIERA--ARQAREKNEKLLQNVKTSEIPINAADLEGINPELLPVIEEEIRSFRDQS 322
Query: 365 WRVISSIEQKTEGSERKQQMAKEYRVKVEKELREICYDVLGLLDKHLIPK 514
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 323 ---AMKKREKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 817
Score = 26.2 bits (55), Expect = 8.7
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Frame = +2
Query: 626 QKAYQDAFEISKAKMQPTHPIRL-GLALNF-SVFYYEILNSPDKACQLAKQAFDDAIAEL 799
Q+ D E + P H L F S Y ++ D QLA Q F ++
Sbjct: 415 QRLVADLHEFYNSVKGPAHSFETEDPVLKFVSQSYDDLFPYMDNFIQLAVQLFYHISKKV 474
Query: 800 DTLNEDSYKDSTLIMQLLRDN 862
+ L +++ S ++Q ++DN
Sbjct: 475 NCLYVEAFSSSDAVLQRIQDN 495
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,895,107
Number of Sequences: 5004
Number of extensions: 76118
Number of successful extensions: 258
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 621560784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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