Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_N02
(1161 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for ... 101 5e-21
BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear ribonucle... 101 5e-21
BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear ribonucle... 101 5e-21
AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear ribonucle... 101 5e-21
AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear ribonucle... 101 5e-21
AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear ribonucle... 99 3e-20
M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small ... 72 3e-12
AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear ribonucle... 46 3e-04
AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens ... 31 6.0
AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens ... 31 6.0
>X12517-1|CAA31037.1| 159|Homo sapiens protein ( Human mRNA for U1
small nuclear RNP-specific C protein. ).
Length = 159
Score = 101 bits (242), Expect = 5e-21
Identities = 48/71 (67%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Frame = +3
Query: 39 DLXLTHXSPRVRKTHCTGRKHXDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 215
D LTH SP VRKTHC+GRKH +NVK YYQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 10 DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69
Query: 216 --NKGTAIPPP 242
G IPPP
Sbjct: 70 PPPAGAMIPPP 80
>BC121083-1|AAI21084.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 101 bits (242), Expect = 5e-21
Identities = 48/71 (67%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Frame = +3
Query: 39 DLXLTHXSPRVRKTHCTGRKHXDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 215
D LTH SP VRKTHC+GRKH +NVK YYQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 10 DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69
Query: 216 --NKGTAIPPP 242
G IPPP
Sbjct: 70 PPPAGAMIPPP 80
>BC121082-1|AAI21083.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 101 bits (242), Expect = 5e-21
Identities = 48/71 (67%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Frame = +3
Query: 39 DLXLTHXSPRVRKTHCTGRKHXDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 215
D LTH SP VRKTHC+GRKH +NVK YYQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 10 DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69
Query: 216 --NKGTAIPPP 242
G IPPP
Sbjct: 70 PPPAGAMIPPP 80
>AL139100-3|CAI20351.1| 180|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 180
Score = 101 bits (242), Expect = 5e-21
Identities = 48/71 (67%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Frame = +3
Query: 39 DLXLTHXSPRVRKTHCTGRKHXDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 215
D LTH SP VRKTHC+GRKH +NVK YYQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 31 DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 90
Query: 216 --NKGTAIPPP 242
G IPPP
Sbjct: 91 PPPAGAMIPPP 101
>AL139100-2|CAI20350.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 159
Score = 101 bits (242), Expect = 5e-21
Identities = 48/71 (67%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Frame = +3
Query: 39 DLXLTHXSPRVRKTHCTGRKHXDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 215
D LTH SP VRKTHC+GRKH +NVK YYQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 10 DTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69
Query: 216 --NKGTAIPPP 242
G IPPP
Sbjct: 70 PPPAGAMIPPP 80
>AK223098-1|BAD96818.1| 159|Homo sapiens small nuclear
ribonucleoprotein polypeptide C variant protein.
Length = 159
Score = 99.1 bits (236), Expect = 3e-20
Identities = 47/71 (66%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Frame = +3
Query: 39 DLXLTHXSPRVRKTHCTGRKHXDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG- 215
D LTH SP VRKTHC+GRKH +N K YYQKWMEEQAQ LID TTAAF+ GKI PF
Sbjct: 10 DTYLTHDSPSVRKTHCSGRKHRENEKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSA 69
Query: 216 --NKGTAIPPP 242
G IPPP
Sbjct: 70 PPPAGAMIPPP 80
>M18465-1|AAA36618.1| 106|Homo sapiens protein ( Human U1 small
nuclear ribonucleoprotein mRNA, 3' end. ).
Length = 106
Score = 72.1 bits (169), Expect = 3e-12
Identities = 35/53 (66%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Frame = +3
Query: 93 RKHXDNVKFYYQKWMEEQAQHLIDATTAAFKAGKIAQNPFG---NKGTAIPPP 242
RKH +NVK YYQKWMEEQAQ LID TTAAF+ GKI PF G IPPP
Sbjct: 4 RKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 56
>AL139100-4|CAI20352.1| 118|Homo sapiens small nuclear
ribonucleoprotein polypeptide C protein.
Length = 118
Score = 45.6 bits (103), Expect = 3e-04
Identities = 24/39 (61%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Frame = +3
Query: 135 MEEQAQHLIDATTAAFKAGKIAQNPFG---NKGTAIPPP 242
MEEQAQ LID TTAAF+ GKI PF G IPPP
Sbjct: 1 MEEQAQSLIDKTTAAFQQGKIPPTPFSAPPPAGAMIPPP 39
>AK128140-1|BAC87294.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ46261 fis, clone TESTI4025062. ).
Length = 280
Score = 31.5 bits (68), Expect = 6.0
Identities = 38/119 (31%), Positives = 52/119 (43%)
Frame = +2
Query: 53 TXFTSCQENSLHRKKTXRQCEVLLSEMDGGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCN 232
T FTSC S T R S GTS+TS +SG S CS W +
Sbjct: 23 TSFTSCSCRSSGTSSTSR------SWWSSGTSSTSCSWWSSGTSSTF-CS--CWSSG-TS 72
Query: 233 TTTLGSFGNGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNETAY 409
T+ + +GT TP SC R S TS W S GT++ ++W+ ++ + T Y
Sbjct: 73 FTSCSCWSSGTSSTPCSC-RSSGTSSTSC--SCWSS-GTSS---TSWSCKSSGTSSTCY 124
>AK125824-1|BAC86307.1| 280|Homo sapiens protein ( Homo sapiens
cDNA FLJ43836 fis, clone TESTI4005857. ).
Length = 280
Score = 31.5 bits (68), Expect = 6.0
Identities = 38/119 (31%), Positives = 52/119 (43%)
Frame = +2
Query: 53 TXFTSCQENSLHRKKTXRQCEVLLSEMDGGTSTTSHRCNNSGIQSRQNCSKSIWQQRHCN 232
T FTSC S T R S GTS+TS +SG S CS W +
Sbjct: 23 TSFTSCSCRSSGTSSTSR------SWWSSGTSSTSCSWWSSGTSSTF-CS--CWSSG-TS 72
Query: 233 TTTLGSFGNGTRRTPTSCTRWSSRYDTSSIYGSWRSYGTTNDDGSTWANAANDGNETAY 409
T+ + +GT TP SC R S TS W S GT++ ++W+ ++ + T Y
Sbjct: 73 FTSCSCWSSGTSSTPCSC-RSSGTSSTSC--SCWSS-GTSS---TSWSCKSSGTSSTCY 124
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,276,972
Number of Sequences: 237096
Number of extensions: 1755752
Number of successful extensions: 3780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3769
length of database: 76,859,062
effective HSP length: 92
effective length of database: 55,046,230
effective search space used: 16183591620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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