Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N01
         (1171 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    25   1.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   4.4  
EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine hydroxy...    22   7.8  

>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 617 HFRQVYLKVAVKNDGSYLFIVF*ILDVFAIVLR 519
           H+R   L V + N+ SY+ IV    +++ I+++
Sbjct: 148 HYRLYQLSVLIDNNMSYIIIVSFATNLYFIIIQ 180


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 10/54 (18%), Positives = 19/54 (35%)
 Frame = +2

Query: 689 HENWSFGFRDGSFYRSGYGRSETRARAAWEARKGFR*IRYEASRHHRSQSSSFY 850
           +E+W F    G+ +  G       + A W+       +      H  +  S+ Y
Sbjct: 162 YESWPFNTMSGATHHGGIKSDSVTSNAWWDVHSTGSWLDMSGGMHQMANYSTDY 215


>EF592178-1|ABQ95974.1|  532|Tribolium castaneum tyrosine
           hydroxylase protein.
          Length = 532

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = +2

Query: 53  KVKCTRVSLLYYTK--KKSQSVKH 118
           KV+ TRVSLL   K  ++S S++H
Sbjct: 157 KVEMTRVSLLQLIKSLRQSSSLEH 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,807
Number of Sequences: 336
Number of extensions: 4452
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 34125107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)