Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_N01
         (1171 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039...   105   9e-23
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448...    75   1e-13
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395...    50   4e-06
08_02_1186 + 25027498-25029854,25029953-25030564,25031742-250318...    30   3.1  
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204...    29   5.4  
11_06_0543 + 24792110-24792229,24792316-24792521,24793770-247944...    29   7.1  
02_05_0064 - 25529630-25531440,25531663-25531673,25533113-255331...    29   7.1  

>04_04_0337 -
           24503417-24503523,24503612-24503715,24503828-24503927,
           24504009-24504106,24504403-24504455,24504508-24504588,
           24504668-24504739,24504882-24504953,24505045-24505137,
           24505240-24505307,24505388-24505658
          Length = 372

 Score =  105 bits (251), Expect = 9e-23
 Identities = 76/259 (29%), Positives = 121/259 (46%), Gaps = 12/259 (4%)
 Frame = +3

Query: 156 VEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFVSNNSLRSRANY 332
           +E+    +DS +  + DCDGVIW  D L   V E    ++ +GK + FV+NNS +SR  Y
Sbjct: 72  LENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFVTNNSTKSRKQY 131

Query: 333 EAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NKTVYCVTCTETKRVLEAHGFKCKEG 506
             +F+   ++   E +   S A A YL+S+ F  +K VY +      + LE  GF+   G
Sbjct: 132 GKKFETLGLNVNEEEIFASSFAAAAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGG 191

Query: 507 PDLGPEYY----GEYIQYLEDDEEI----GAVVFDSDFKINLPKM-YRAITYLKRPEVLF 659
           P  G +      G Y+++ +D   I    GAVV   D   N  K+ Y  +   + P  LF
Sbjct: 192 PSDGDKKIELKPGFYMEHDKDVTTIPTLVGAVVVGFDRYFNYYKVQYGTLCIRENPGCLF 251

Query: 660 INGATDRMVPMKXXXXXXXXXXXXXXXXXEVKREPVLLGKPGRVFGEFAMKRAGITDPSR 839
           I    D +  +                    K+EP+++GKP     ++  K+ GIT  S+
Sbjct: 252 IATNRDAVTHLTDAQEWAGGGSMVGAILGSTKQEPLVVGKPSTFMMDYLAKKFGIT-TSQ 310

Query: 840 VLFIGDMIAQDVSLGKAVG 896
           +  +GD +  D+  G+  G
Sbjct: 311 ICMVGDRLDTDILFGQNGG 329


>09_02_0119 -
           4481522-4481580,4481615-4481718,4483132-4483231,
           4483307-4483404,4483688-4483828,4485736-4485788,
           4486578-4486649,4487730-4487801,4487895-4487987,
           4489040-4489107,4489268-4489358
          Length = 316

 Score = 74.9 bits (176), Expect = 1e-13
 Identities = 46/123 (37%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
 Frame = +3

Query: 150 LSVEDLHKFLDSFDHVLSDCDGVIWTQDSLPR-VGEFFKQMKKRGKTVNFVSNNSLRSRA 326
           L+ +     +DS D  L DCDGVIW  D L   V E    ++K GK + FV+NNS +SR 
Sbjct: 10  LTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFVTNNSRKSRR 69

Query: 327 NYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTFN--KTVYCVTCTETKRVLEAHGFKCK 500
            Y  +F+A  ++   E +   S A A +LK   F+  K VY V        L   GF+C 
Sbjct: 70  QYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGILEELRLAGFECL 129

Query: 501 EGP 509
            GP
Sbjct: 130 GGP 132



 Score = 38.7 bits (86), Expect = 0.009
 Identities = 23/99 (23%), Positives = 42/99 (42%)
 Frame = +3

Query: 600 INLPKMYRAITYLKRPEVLFINGATDRMVPMKXXXXXXXXXXXXXXXXXEVKREPVLLGK 779
           +N   +Y ++   + P  LFI    D    M                   V++EP+++GK
Sbjct: 192 VNRLLLYASLCIRENPGCLFIATNRDPTGHMTSVQEWPGAGTMVAAVSCSVQKEPIVVGK 251

Query: 780 PGRVFGEFAMKRAGITDPSRVLFIGDMIAQDVSLGKAVG 896
           P     +F +K   + + SR+  +GD +  D+  G+  G
Sbjct: 252 PSSFLMDFLLKSFNL-ETSRMCMVGDRLDTDILFGQNTG 289


>12_02_0065 -
           13109652-13110746,13110843-13111762,13139462-13139528,
           13139607-13139675,13139877-13140020,13140100-13140171,
           13140316-13140387,13140466-13140558,13140655-13140726,
           13140809-13140925
          Length = 906

 Score = 50.0 bits (114), Expect = 4e-06
 Identities = 31/109 (28%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
 Frame = +3

Query: 261 KQMKKRGKTVNFVSNNSLRSRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NK 434
           +  + +GK + FV+NNS +SR  Y  +F+   ++   E +   S A   YL+S+ F  +K
Sbjct: 58  RHARSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAYVAYLQSIDFPKDK 117

Query: 435 TVYCVTCTETKRVLEAHGFKCKEGPDLGPEYYG-EYIQYLEDDEEIGAV 578
            VY +      + LE  GF+   GP  G +    +   Y+E D+++  +
Sbjct: 118 KVYVIGEDGILKELELAGFQYLGGPSDGDKKIELKPGFYMEHDKDVTTI 166


>08_02_1186 +
           25027498-25029854,25029953-25030564,25031742-25031847,
           25032669-25033199
          Length = 1201

 Score = 30.3 bits (65), Expect = 3.1
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
 Frame = +3

Query: 381 IIPSIAVAEYLKSVTFNKTVYCVTCT--ETKRVLEAHGFKCKEGPDLGPEYYGEYIQYLE 554
           ++PS+    Y   + F++T+Y + C+  ++KRV++    K  E   L  E    + +  E
Sbjct: 24  VLPSMK--PYPPELRFDRTIY-IDCSRWKSKRVMQR---KIAEELKLDNETMASFDKQDE 77

Query: 555 DDEEIGAVVFDSDFKINLPKMYRAITYLKRPEVLFINGATDRM 683
           +D+  G  +   D  +N+      I    R  ++F+NG+ D +
Sbjct: 78  EDDFSGVDICSRDAILNVSAAISRILSQSRFLMVFLNGSDDEI 120


>01_05_0292 +
           20518668-20519090,20519213-20519281,20520204-20520473,
           20520734-20521084,20521251-20521528,20522755-20523099,
           20523346-20523911,20525155-20525528
          Length = 891

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +2

Query: 716 DGSFYRSGYGRSETRARAAWE--ARKGFR*IRYEASRHHRSQSSSFYR*HDRPRCISRES 889
           DG   RSG GRS +R+R+  +  +R   R  R+  SR  RS+S S  R + R R  SR  
Sbjct: 585 DGRSRRSGRGRSRSRSRSDSDRYSRSPKRSRRHSRSR-TRSRSRSRSRSYTRNRRASRSR 643

Query: 890 S 892
           S
Sbjct: 644 S 644


>11_06_0543 +
           24792110-24792229,24792316-24792521,24793770-24794462,
           24794538-24794717,24794793-24795084,24795166-24795375
          Length = 566

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
 Frame = +3

Query: 258 FKQMKKRGKTVNFVSNNSLRSR-ANYEAQFKAA---SIDNGFESLIIPSIAVAEYLKSVT 425
           F++M ++    NF   NS + R A  +   K A   S+D+     + P  A  +   S+T
Sbjct: 207 FRRMIRKRDCKNFPRKNSRKMRPATMQDFLKEAGLKSMDDVDNIEMAPLAAQFKLGHSLT 266

Query: 426 FNKTVYCV-TCTETKRVLEAHGFKCKEGPDLGPEYY 530
            ++  + V  CT+ +RV E +    KEG ++ P +Y
Sbjct: 267 TDEYRHVVGKCTQMRRVEEWYLQMAKEGKEMFPVFY 302


>02_05_0064 -
           25529630-25531440,25531663-25531673,25533113-25533198,
           25533412-25534259,25535385-25535736
          Length = 1035

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = -3

Query: 401 HCDRWNDQALKAVVDAGCFELSFIICSGSKAVIGNEIYCL-PAFLHL 264
           HC + +D+ LKAV+  GC  L  ++ +G + +  N +  L  + +HL
Sbjct: 141 HCRKLSDKGLKAVL-LGCQNLRQLVIAGCRLITDNLLIALSKSCIHL 186


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,625,765
Number of Sequences: 37544
Number of extensions: 488389
Number of successful extensions: 1121
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3573221976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)