Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M23
         (1166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy...    36   0.011
SPCC13B11.03c |||hydroxyacylglutathione hydrolase |Schizosacchar...    36   0.014
SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|...    30   0.54 
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    28   2.9  
SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|...    27   5.0  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   8.7  

>SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 256

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
 Frame = +1

Query: 313 INYVVSTHGHSDHVGNNNLFLN---AKHIVGFSISFREKYFMHPFDKGEEYKIND-SVKV 480
           + Y+++TH H DH G N   L+   +  + G   +    Y   P DK E +K+ +  V+ 
Sbjct: 56  LQYILTTHHHYDHAGGNEDILSYFPSLKVYGGKNASGVTY--TPKDK-EIFKVGEVQVEA 112

Query: 481 IPTPGHTQSDVTVIATTRRGEAIAITGD 564
           + TP HTQ  +    ++    A+  TGD
Sbjct: 113 LHTPCHTQDSICYYVSSPSKRAV-FTGD 139


>SPCC13B11.03c |||hydroxyacylglutathione hydrolase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 256

 Score = 35.5 bits (78), Expect = 0.014
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +1

Query: 322 VVSTHGHSDHVGNN-NLFLNAKHIVGFSISFREKYFMHPFDKGEEYKI-NDSVKVIPTPG 495
           +++TH H+DH G N NL     H+  +  S  +    H     E  +I N  ++ + TP 
Sbjct: 59  ILTTHHHADHSGGNLNLKKEFPHVTIYGGS-DQNGVSHVLQDKETLRIGNVQIEALHTPC 117

Query: 496 HTQSDVTVIATTRRGEAIAITGD 564
           HT+  +   A +    A+  TGD
Sbjct: 118 HTRDSICFYAHSSNEHAV-FTGD 139


>SPCC1906.03 |wtf19||wtf element Wtf19|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 393

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = -1

Query: 452 SSPLSKGCIKYFSLNDILNPTICFAFKKRLLFPTWSECPCVDTT*FIASGIIWFCCRAFF 273
           +SPL K  + + S+  +  P +C+   K  LF  + +   V    + AS ++ F    +F
Sbjct: 98  TSPLKKAFLSFISIFVLNVPAVCYLTYKDALFKDYGKDEWVYFAVWCASCLMIFISLWYF 157

Query: 272 ILSASQAVMVSTIIL 228
             +  +AV V+ I L
Sbjct: 158 YETWIKAVKVTVIFL 172


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 388 IVGFSISFREKYFMHPFDKGEEYKINDSVKVIPTPGHTQSDVTVIAT 528
           I GF   +R+ Y   PF+  E Y I DS  +IP P      + ++ T
Sbjct: 157 ITGFEEPWRKTYASIPFNTLEYYNI-DSWALIPNPFSPDLGMDIVVT 202


>SPCC1620.02 |wtf23||wtf element Wtf23|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 368

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 19/75 (25%), Positives = 35/75 (46%)
 Frame = -1

Query: 452 SSPLSKGCIKYFSLNDILNPTICFAFKKRLLFPTWSECPCVDTT*FIASGIIWFCCRAFF 273
           +SPL K  + + S+  +  P +C+   K  LF  + +   V    + A  ++ F    +F
Sbjct: 98  TSPLKKAFLSFISIFVLNVPAVCYLTYKDALFKDYGKDEWVYFGVWCAICLMIFISLWYF 157

Query: 272 ILSASQAVMVSTIIL 228
             +  +AV V+ I L
Sbjct: 158 YETWIKAVKVTVIFL 172


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 16/82 (19%), Positives = 30/82 (36%)
 Frame = +1

Query: 292 NQMIPEAINYVVSTHGHSDHVGNNNLFLNAKHIVGFSISFREKYFMHPFDKGEEYKINDS 471
           N++I  A  + +S   + DH+ +  +      + G +     K     + K  EY   D 
Sbjct: 335 NRLIKSAAKWSISEAFYYDHIVSYYMLKQPDFVEGVNAQLITKTKNPKWSKSHEYHFKDL 394

Query: 472 VKVIPTPGHTQSDVTVIATTRR 537
                 P    + ++  A  RR
Sbjct: 395 ENYFKLPSEYNNGISFAAKGRR 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,087
Number of Sequences: 5004
Number of extensions: 54972
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)