Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M22
         (1159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    70   7e-13
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    31   0.30 
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    28   2.1  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   5.0  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    27   6.5  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 69.7 bits (163), Expect = 7e-13
 Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
 Frame = +1

Query: 97  SKKNVGLIQLNRPKALNALCKPLFVELGKAVNEFDADSNIAAIIIT-GNEKAFAAGADIK 273
           SK    +  LNRPK LNA+   +   +   +   + +SN+A +II  GN ++F++G DIK
Sbjct: 62  SKNGARIFTLNRPKVLNAINVDMIDSILPKLVSLE-ESNLAKVIILKGNGRSFSSGGDIK 120

Query: 274 EMQNNTYSSN---TKQGFLREWE---DISNCGKPIIAAVNGFALGGGCELAMLCDIIYAG 435
               +         +  F +E+     ++   KP++A +NG  +GGG  LAM      A 
Sbjct: 121 AAALSIQDGKLPEVRHAFAQEYRLSHTLATYQKPVVALMNGITMGGGSGLAMHVPFRIAC 180

Query: 436 EKAKFGQPEINIGTIPGAGGT---QRLPRYVGKSKAMEIVLTGNFFDAHEAXKMGLVSKV 606
           E   F  PE  IG       +    RLP Y G      + LT      ++  + G+ +  
Sbjct: 181 EDTMFAMPETGIGYFTDVAASFFFSRLPGYFG----TYLGLTSQIVKGYDCLRTGIATHF 236

Query: 607 FPVEKLXXETIKLAE 651
            P         +LAE
Sbjct: 237 VPKHMFPHLEDRLAE 251


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 440 RRNSVSPRSTLAPSPEPEAPSVFPDTLASRK 532
           RR+S S RS +    EPE PS+  + +AS K
Sbjct: 10  RRSSTSKRSVIDDDSEPELPSMTKEAIASHK 40


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
 Frame = -2

Query: 450 EFRLFAGIDDIAQHCQLTTTSKSETINSGNDGLPTVGDVL-PFAKEALFCVAAVCIVLHL 274
           E   F   DDI ++CQ    +  E  +    G+    + L P AK+    VA + I   L
Sbjct: 171 ELHPFLSQDDIVKYCQSHDIA-IEAYSPLTHGIRLNDEKLVPIAKKLNISVAQLLIRWSL 229

Query: 273 ----LNISTSRKRLLVTSDDDGSNVAVGVKLIDCLPEFDKQWFA 154
               + I  S K+  + SD D  N  +   ++  L  FD+ W A
Sbjct: 230 QKGYIPIIKSTKKEHMLSDLDVFNFTIPDDVVQELSSFDEHWHA 273


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 434 AKRRNSVSPRSTLAPSPEPEAPSVFP 511
           AK +  V+P    AP  EP  PS+ P
Sbjct: 290 AKSKKKVTPAPAPAPESEPSKPSIAP 315


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 172 ELGKAVNEFDADSNI-AAIIITGNEK---AFAAGADIKEMQNNTYSSNTKQGFLREWED 336
           EL + ++E+   S I  A+ +  N K   +F     IKE++  TY+    Q    E++D
Sbjct: 11  ELKRYLDEYGVWSKIFRALFVARNSKPLRSFCVHYAIKELKEKTYNLELYQSLFEEFQD 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,929
Number of Sequences: 5004
Number of extensions: 66951
Number of successful extensions: 215
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)