Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M22
         (1159 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   2.9  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   8.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 2.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +2

Query: 575  KPXKWVLSVKYSQWKNXXKKPSSWLKGSEPTPRXL 679
            KP +++L     Q     +K   WL+G   TP  +
Sbjct: 976  KPTEYLLEDSMKQQYGKRRKEPPWLEGVHVTPELI 1010


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -3

Query: 353 FPQLEMSSHSRRKPCFVLLLYVLFCISLISAPAANAF 243
           +P +      RR+P F +   +L CI LI++ A   F
Sbjct: 200 YPDITYEIRLRRRPMFYVFNLILPCI-LINSVALLVF 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,979
Number of Sequences: 438
Number of extensions: 4934
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39283326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)