Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M21
         (1228 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   1.0  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   5.4  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   7.2  

>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 114 KCPRYQNYQQYQKKIDLDNFII 179
           K   Y NY  Y KK+   N+II
Sbjct: 90  KYSNYNNYNNYNKKLYYKNYII 111


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 70  NNXFEYMSRSGNY*KNVQDTKTTNNIKR 153
           NN ++Y   + NY  N  +    NN K+
Sbjct: 326 NNNYKYNYNNNNYNNNNYNNNYNNNCKK 353


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +3

Query: 102 KLLEKCPRYQNYQQYQKKIDLDNFIIGPYPELLLMV 209
           KL  KC   QN    +K   L    +  +PE+L  V
Sbjct: 94  KLFNKCKSIQNEDPCEKAYQLVKCYVEFHPEVLQTV 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,956
Number of Sequences: 438
Number of extensions: 3662
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 41781924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)