Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M18
         (1217 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.99 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   3.0  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.99
 Identities = 17/42 (40%), Positives = 17/42 (40%)
 Frame = +1

Query: 472 GGGGGGXXXKKKXPPPXGGXXGXFFXHXGXXGXXKKGGGXGG 597
           GGG GG       PPP  G  G F    G  G     GG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGF---GGFGGEGHHHGGHGG 225


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 944 PPPPXXGGGXPPPP 903
           PPPP   G  PPPP
Sbjct: 765 PPPPGVAGAGPPPP 778



 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = -1

Query: 944 PPPPXXGGGXPPPPXXXXGXFFXXXPP 864
           PP P  GG  PPPP           PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.308    0.148    0.467 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,288
Number of Sequences: 5004
Number of extensions: 29290
Number of successful extensions: 31
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)