Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M14
         (1195 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0672 + 23359510-23361253,23389969-23390203,23392078-233922...    31   1.8  
11_04_0305 - 16162063-16162096,16162282-16164365,16165283-161653...    30   4.1  
02_05_1247 + 35233756-35233785,35234902-35236107                       29   5.5  

>06_03_0672 +
           23359510-23361253,23389969-23390203,23392078-23392234,
           23392535-23392597
          Length = 732

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -2

Query: 369 CFKNPPTCIRLVSKQEQYIINPN*TQTISRCTDRHSHRVTRRIFSMGRDSD 217
           CFK   T  +++S+Q + I+N      I +   + SHR TR + S G DSD
Sbjct: 537 CFKGKNTLDKILSEQ-RCILNKEGLGFIPKKGKKPSHRATRFVKSNGVDSD 586


>11_04_0305 - 16162063-16162096,16162282-16164365,16165283-16165351,
            16168317-16169288,16169548-16169650,16170427-16170509
          Length = 1114

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -1

Query: 733  SYRSFSCVASAIVIDNDNDQRVHRFFYLHQKFILLQKNR*IQQDTSKRRNVTTPDFTNNK 554
            S  +F+CV    V DN + QR+  F  L +  I+      + ++  + R +T  D++   
Sbjct: 989  SLDNFACVVELSVDDNPDLQRISNFPKLRKLDIMFCPKMEVLENVPELRILTLKDYSIET 1048

Query: 553  LPTHI 539
            LP ++
Sbjct: 1049 LPGYL 1053


>02_05_1247 + 35233756-35233785,35234902-35236107
          Length = 411

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
 Frame = +3

Query: 171 NISLSKSRDLLSLTRDRNRDPLRR--SGE*LGGYVYRYIEISSV 296
           ++S+SK  + +++ RDRN  PLRR  S + LGG    +++I ++
Sbjct: 346 HVSISKGDECIAVRRDRNVLPLRRSFSMDSLGGAGEVHLQIQNI 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,552,840
Number of Sequences: 37544
Number of extensions: 416329
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3643211076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)