Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M11
         (1210 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   3.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   6.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.1  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/35 (40%), Positives = 14/35 (40%)
 Frame = -3

Query: 917 GXXXXPPPXXRGXGGVFFFXXXXFXXGXXGGFFGG 813
           G    PPP   G GG   F       G  GGF GG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGG 229


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -1

Query: 640 PPFXGXPPXPPXGGXXPXPPPFP 572
           PP    PP PP G   P  PP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 11/21 (52%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
 Frame = -1

Query: 637  PFXGXPPXP-PXGGXXPXPPP 578
            P  G PP P P  G  P PPP
Sbjct: 1174 PSSGIPPVPKPAAGVPPVPPP 1194


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 637 PFXGXPPXPPXGGXXPXPPP 578
           P    PP P  GG  P PPP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPP 767


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.304    0.141    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,286,344
Number of Sequences: 5004
Number of extensions: 30187
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)