Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_M11
(1210 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0161 + 15312986-15313160,15313250-15313557,15313676-153137... 34 0.19
02_05_0686 - 30900748-30902167,30903442-30904742 34 0.26
07_01_0080 + 587674-588510 31 2.4
05_03_0313 + 12200743-12200955,12201238-12201622,12201997-122022... 30 3.2
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 30 3.2
08_01_0888 + 8719416-8719720,8719747-8720482 29 5.5
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 5.5
02_02_0240 + 8196140-8198248,8198381-8198650 29 5.5
11_06_0610 - 25449085-25453284 29 9.7
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 29 9.7
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 29 9.7
01_07_0082 - 40965947-40967023 29 9.7
>10_08_0161 +
15312986-15313160,15313250-15313557,15313676-15313754,
15313856-15314373
Length = 359
Score = 34.3 bits (75), Expect = 0.19
Identities = 21/56 (37%), Positives = 23/56 (41%)
Frame = +1
Query: 184 PXKKKKXXXKKKXXKKXGGXKXXGXXPPXGGGGXPXXKKKKXXGGGPPXKKXXKKK 351
P KK KK KK GG GGGG K +K GGG K+ K K
Sbjct: 104 PPPKKDKEEKKDKDKKGGGDDKKAEKEKGGGGGDK--KAEKEKGGGDKPKEEKKAK 157
Score = 29.5 bits (63), Expect = 5.5
Identities = 19/55 (34%), Positives = 21/55 (38%)
Frame = +3
Query: 183 PPQKKKXXXXKKXXKKXGGXXXXXXXPPXXGGGXXPXKKKKXXXGGAPXKKXXKK 347
PP KK K KK GG GGG +K+K GG K KK
Sbjct: 104 PPPKKDKEEKKDKDKKGGGDDKKAEKEKGGGGGDKKAEKEK---GGGDKPKEEKK 155
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 33.9 bits (74), Expect = 0.26
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 640 PPFXGXPPXPPXGGXXPXPPPFP 572
PP G PP PP G P PPP P
Sbjct: 348 PPAKGPPPPPPPKGPSPPPPPPP 370
Score = 31.9 bits (69), Expect = 1.0
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -2
Query: 642 PPPFXGXPLXPPXGGXXPXPPXSPXXXXXXXXXXXGAPXXXPPXPXGG 499
PPP G P PP G P PP PP P GG
Sbjct: 338 PPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Score = 31.9 bits (69), Expect = 1.0
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = -1
Query: 640 PPFXGXPPXPPXGGXXPXPPP 578
PP G PP PP G P PPP
Sbjct: 339 PPPKGPPPPPPAKGPPPPPPP 359
Score = 29.5 bits (63), Expect = 5.5
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Frame = +1
Query: 781 PPXEKKKXXXXPPKNPPXXPXXK----XXXKKKKTPPXPRXXGGGXXXXP 918
PP K PPK PP P K K +PP P GG P
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPP 378
Score = 29.1 bits (62), Expect = 7.3
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 769 GGGXPPXEKKKXXXXPPKNPPXXPXXKXXXKKKKTPPXPRXXG 897
G PP K PPK P P KK PP P G
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Score = 29.1 bits (62), Expect = 7.3
Identities = 15/43 (34%), Positives = 15/43 (34%)
Frame = +1
Query: 772 GGXPPXEKKKXXXXPPKNPPXXPXXKXXXKKKKTPPXPRXXGG 900
G PP K PP P P KK PP P GG
Sbjct: 343 GPPPPPPAKGPPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Score = 28.7 bits (61), Expect = 9.7
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -2
Query: 642 PPPFXGXPLXPPXGGXXPXPPXSPXXXXXXXXXXXGAPXXXPPXPXGG 499
PPP P PP G P PP P PP P GG
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAK----GPPPPPPPKGPSPPPPPPPGG 372
>07_01_0080 + 587674-588510
Length = 278
Score = 30.7 bits (66), Expect = 2.4
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 640 PPFXGXPPXPPXGGXXPXPPPFP 572
PP G PP PP P PPP P
Sbjct: 98 PPSSGSPPPPPPPPPPPPPPPPP 120
>05_03_0313 +
12200743-12200955,12201238-12201622,12201997-12202274,
12202359-12202976
Length = 497
Score = 30.3 bits (65), Expect = 3.2
Identities = 18/42 (42%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 781 PPXEKKKXXXXPPKNPPXXPXXKXXXKKK-KTP-PXPRXXGG 900
PP KK K PP P K +KK KTP P P GG
Sbjct: 452 PPILAKKLEQPAQKKPPSAPKPKKVWRKKPKTPTPSPPETGG 493
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 30.3 bits (65), Expect = 3.2
Identities = 14/47 (29%), Positives = 16/47 (34%)
Frame = -2
Query: 642 PPPFXGXPLXPPXGGXXPXPPXSPXXXXXXXXXXXGAPXXXPPXPXG 502
PPP+ P PP PP +P AP P P G
Sbjct: 439 PPPYASYPPPPPGSSMYNPPPPAPGQATPPPYGVQYAPPPAPIPPPG 485
>08_01_0888 + 8719416-8719720,8719747-8720482
Length = 346
Score = 29.5 bits (63), Expect = 5.5
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 781 PPXEKKKXXXXPPKNPPXXPXXKXXXKKK-KTP-PXPRXXGG 900
PP KK K PP P K ++K KTP P P GG
Sbjct: 301 PPIPAKKLEQLAQKKPPSAPKPKKVWREKPKTPAPSPPETGG 342
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.5 bits (63), Expect = 5.5
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = -1
Query: 640 PPFXGXPPXPPXGGXXPXPPPF 575
PPF PP PP G P P F
Sbjct: 49 PPFLAPPPPPPPGPPPPHQPQF 70
Score = 29.1 bits (62), Expect = 7.3
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Frame = -2
Query: 642 PPPFXGXP-LXPPXGGXXPXPPXSPXXXXXXXXXXXGAPXXXPPXPXGGG 496
PPP G P PP P PP P P PP P G
Sbjct: 12 PPPQGGFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPG 61
>02_02_0240 + 8196140-8198248,8198381-8198650
Length = 792
Score = 29.5 bits (63), Expect = 5.5
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = -1
Query: 622 PPXPPXGGXXPXPPP 578
PP PP GG P PPP
Sbjct: 23 PPPPPGGGAKPEPPP 37
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 9.7
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 781 PPXEKKKXXXXPPKNPPXXPXXKXXXKKKKTPPXP 885
PP EK P K+PP +K+PP P
Sbjct: 775 PPEEKSPPPHSPEKSPPSEAHPTSPPPSEKSPPTP 809
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 28.7 bits (61), Expect = 9.7
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = -1
Query: 640 PPFXGXPPXPPXGGXXPXPPPFPXXXXXXXXXXXXGPXXXXPXP 509
PP PP PP P PPP P P P P
Sbjct: 1164 PPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPP 1207
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.7 bits (61), Expect = 9.7
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -3
Query: 320 PPPXXFFFFXXGXPPPPXGGXXPXXXXPP 234
PPP PPPP GG P PP
Sbjct: 283 PPPNAPMGMPPRIPPPPVGGTQPPPPPPP 311
>01_07_0082 - 40965947-40967023
Length = 358
Score = 28.7 bits (61), Expect = 9.7
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 579 GGGXGFXPPXGGXGGXPXKGGXPXKKN 659
GGG G+ PP G GG + P KKN
Sbjct: 287 GGGYGY-PPQAGYGGYQQQAVKPAKKN 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.304 0.141 0.455
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,129,328
Number of Sequences: 37544
Number of extensions: 544421
Number of successful extensions: 1353
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3701409336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.7 bits)
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