Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_M10
(1260 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.048
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 33 0.083
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 31 0.44
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 22 3.2
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.5
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.9 bits (74), Expect = 0.048
Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Frame = -1
Query: 963 PPPPXXXXXPXP---PXXXPXPXXXXXXPPPPPP 871
PPPP P P P P P PPPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 33.9 bits (74), Expect = 0.048
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -2
Query: 959 PPPXXXXXXPPPXXXPPPXXXXXXPPPPP 873
PPP PPP PP PPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 33.1 bits (72), Expect = 0.083
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -1
Query: 963 PPPPXXXXXPXPPXXXPXPXXXXXXPPPPPP 871
PPP P PP P PPPPPP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 32.7 bits (71), Expect = 0.11
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = -1
Query: 963 PPPPXXXXXPXPPXXXPXPXXXXXXPPPPPP 871
P PP PP P P PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 31.9 bits (69), Expect = 0.19
Identities = 14/32 (43%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Frame = -2
Query: 962 PPPPXXXXXXPPPX--XXPPPXXXXXXPPPPP 873
PPPP P P PPP PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765
Score = 30.3 bits (65), Expect = 0.59
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Frame = -2
Query: 632 PXTPPXXGGPPXPPP----RGXXTPPTXPXP 552
P P GGPP PPP G PP P P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 29.9 bits (64), Expect = 0.77
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = -1
Query: 963 PPPPXXXXXPXPPXXXPXPXXXXXXPPPPPP 871
PP P P PP PPPPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 2.4
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Frame = -2
Query: 632 PXTPPXXGGPPXPPPRG-XXTPPTXPXPXDPXI 537
P P G PP PPP G P P P P +
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAV 785
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = -2
Query: 317 PPXXQXXXPTXXTXXXXXSPPXPPPXGXPPPXP 219
PP PT PP P G PPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/29 (37%), Positives = 11/29 (37%)
Frame = -2
Query: 992 PXXXXXGXXXPPPPXXXXXXPPPXXXPPP 906
P G PPPP PP PPP
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 33.1 bits (72), Expect = 0.083
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 960 PPPXXXXXPXPPXXXPXPXXXXXXPPPPPP 871
PPP P PP P P PPPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 30.3 bits (65), Expect = 0.59
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = -2
Query: 962 PPPPXXXXXXPPPXXXPPPXXXXXXPPPPP 873
P PP PPP PP PPPP
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -2
Query: 962 PPPPXXXXXXPPPXXXPPPXXXXXXPPPPP 873
PP PPP PPP P PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -3
Query: 961 PPPXXXXXXXPPXXXXXPXXXXXXPPPPPP 872
PPP PP P PPPP P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 30.7 bits (66), Expect = 0.44
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 623 PPXXGGPPXPPPRGXXTPPTXPXPXDP 543
PP G PP PPP PP+ P P P
Sbjct: 5 PP--GNPPPPPPPPGFEPPSQPPPPPP 29
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -2
Query: 932 PPPXXXPPPXXXXXXPPPPP 873
PPP PP PPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = -2
Query: 956 PPXXXXXXPPPXXXPPPXXXXXXPPPPP 873
PP PPP PP PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPP--SQPPPPPPP 30
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -3
Query: 262 PPXPPPQXGXPPPXRP 215
PP PPP G PP +P
Sbjct: 9 PPPPPPPPGFEPPSQP 24
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/22 (45%), Positives = 10/22 (45%)
Frame = -1
Query: 936 PXPPXXXPXPXXXXXXPPPPPP 871
P PP P PPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 1.0
Identities = 30/144 (20%), Positives = 30/144 (20%), Gaps = 7/144 (4%)
Frame = -2
Query: 962 PPPPXXXXXXPPPXXXPPPXXXXXXPPPPPXXXXXXXXXXXXXXXXXXXXGPXXGKXXXX 783
PPPP PP PPPPP P
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396
Query: 782 XXXPGXXPPX-------TXXXXFXFSXXGXGPPXKPXHXPXLXXXXRXXPXXXXXLXPXT 624
PP T S PP P P P
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456
Query: 623 PPXXGGPPXPPPRGXXTPPTXPXP 552
PP G P PP P P P
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 29.1 bits (62), Expect = 1.4
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -1
Query: 333 PTXXXSPPXAAXXPXXXNXXXPXVPPXPPPXXXPPPRP 220
P PP A P P PP PP PPP P
Sbjct: 444 PAAPPLPPSAPIAPPLP-AGMPAAPPLPPAAPAPPPAP 480
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -1
Query: 960 PPPXXXXXPXPPXXXPXPXXXXXXPPPPPP 871
PPP P P PPPPPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPP 366
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = -2
Query: 962 PPPPXXXXXXPPPXXXPPPXXXXXXPPPPP 873
PPPP PP PPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
Score = 26.2 bits (55), Expect = 9.5
Identities = 21/78 (26%), Positives = 25/78 (32%)
Frame = -3
Query: 457 KKXPXPPPPXXAKXXXPRVXLLIFXXXNLPHXPXEPXXXXXPNXXXFPPXXSXXPXPXXX 278
K+ P PPPP P + +LP P P + P S P P
Sbjct: 309 KRPPPPPPPSRRNRGKPPIG-NGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPP--- 364
Query: 277 XHXXXPPXPPPQXGXPPP 224
PP P G PP
Sbjct: 365 -----PPRSAPSTGRQPP 377
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/31 (35%), Positives = 11/31 (35%)
Frame = -1
Query: 963 PPPPXXXXXPXPPXXXPXPXXXXXXPPPPPP 871
PPPP P PPPPPP
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 22.2 bits (45), Expect(3) = 3.2
Identities = 10/30 (33%), Positives = 11/30 (36%)
Frame = -1
Query: 333 PTXXXSPPXAAXXPXXXNXXXPXVPPXPPP 244
P P AA + P PP PPP
Sbjct: 168 PPSFQPPSAAAPATSLPSDYNPPPPPPPPP 197
Score = 21.0 bits (42), Expect(3) = 3.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -1
Query: 270 PXVPPXPPPXXXP 232
P PP PPP P
Sbjct: 236 PAPPPPPPPTLPP 248
Score = 20.6 bits (41), Expect(3) = 3.2
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = -1
Query: 258 PXPPPXXXPPPRP 220
P PP PPRP
Sbjct: 273 PPPPATPSQPPRP 285
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 872 GGGGGGXXXXXXGXGXXXGGXGXXXXXGGGG 964
GGG GG G G GG G GGG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGG 257
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,002
Number of Sequences: 5004
Number of extensions: 31425
Number of successful extensions: 463
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 683589232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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