Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M09
         (1220 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    28   3.0  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   5.3  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    27   7.0  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    27   7.0  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    27   7.0  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -1

Query: 380 SGLSRSPLLMIPNRKQPSLMIS 315
           SG+SR P+LM P+  +PSL ++
Sbjct: 369 SGMSRHPMLMNPSTPEPSLGVN 390


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 17/89 (19%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
 Frame = +2

Query: 671 MLFFQGLLFYIPHWIWKNWE-----EGKVRLISEGMRGTMASIADDKNNR--QNRLVQYL 829
           +L+ +  +     W+ K W        + + +S+ MR T  +I DD N+R  +++  +++
Sbjct: 665 LLWNENAIMGTKRWLTKIWNCVHQLLEREKKMSDAMRQTKLTIVDDHNSRKLESQYNEFI 724

Query: 830 LD-TLHMHNTYSFGYFFCEVLNFANVVGN 913
              + H  N +S      + +   N + +
Sbjct: 725 SQCSAHYENVFSLNLVISDAMKLTNNIAD 753


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -2

Query: 559 DPAERIDHVSRVSAVTNASNGFTDQVISRNEYATK-KQYGRCDPIVHTEHHV 407
           DP  +++   +++  TN    F     S     T  +  GR   IVH EHH+
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -2

Query: 559 DPAERIDHVSRVSAVTNASNGFTDQVISRNEYATK-KQYGRCDPIVHTEHHV 407
           DP  +++   +++  TN    F     S     T  +  GR   IVH EHH+
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -2

Query: 559 DPAERIDHVSRVSAVTNASNGFTDQVISRNEYATK-KQYGRCDPIVHTEHHV 407
           DP  +++   +++  TN    F     S     T  +  GR   IVH EHH+
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,505,584
Number of Sequences: 5004
Number of extensions: 94620
Number of successful extensions: 236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 661404424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)