Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M08
         (1199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    27   3.9  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    27   5.2  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    27   6.8  

>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
 Frame = -2

Query: 676 YYHPAYFCREVVMRFVYHL-WVVD----NNSRHCCQLFTSFFSRLGSVQRQLNYLMFYDL 512
           Y HP+      V  F++HL W++     N S  CC L +   +R+    ++ N  MF++ 
Sbjct: 161 YGHPSGRPFRSVNDFLHHLYWLISDLTRNESTCCCVLCSGNMTRVRKNLQKENERMFHEC 220

Query: 511 K--IYFW 497
           K   Y W
Sbjct: 221 KDDTYTW 227


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -3

Query: 828 TNFCNEIRTQQMFTIDFHGEGITSCNKNEILKIIIC 721
           TN C  IRT Q   +   G    SCN N +L  + C
Sbjct: 113 TNLCGRIRTTQGKGLMPDGTSRFSCNGNTLLHFMGC 148


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 716 ITQIIILRISFLLHDVIPSPWKSIVNI 796
           +T  I+L I F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,214,532
Number of Sequences: 5004
Number of extensions: 87885
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)