Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M08
         (1199 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    29   7.3  
07_01_0594 + 4428440-4429837                                           29   9.6  

>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 834 AGTNFCNEIRTQQMFTIDFHGEGITSC-NKNEILKIIICVITGGRTSCESTWVGTTTLPI 658
           +GT+   +    ++  +D  G GIT+C  +NEI K    ++ G      +  V   T  +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 657 SAV 649
           +AV
Sbjct: 89  NAV 91


>07_01_0594 + 4428440-4429837
          Length = 465

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 701 PLVSPHGWVLPPCLFLP*SSNAFRIPP 621
           P+ SP GW LPPC   P   N FR  P
Sbjct: 32  PVPSPSGWELPPC---PVLRNVFRRLP 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,200,798
Number of Sequences: 37544
Number of extensions: 524943
Number of successful extensions: 979
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3666490380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)