Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M08
         (1199 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23523-1|AAC46560.2|  305|Caenorhabditis elegans Hypothetical pr...    32   0.93 
AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical...    31   2.1  

>U23523-1|AAC46560.2|  305|Caenorhabditis elegans Hypothetical
           protein F53A9.5 protein.
          Length = 305

 Score = 31.9 bits (69), Expect = 0.93
 Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -3

Query: 723 CVITG-GRTS-CESTWVGTT-TLPISAVK**CVSYTTCG*STITAAIVVNFSLHS 568
           CV+ G G T+ C   W  T  TLPIS +   C S  TC   T+   + VN+ LHS
Sbjct: 106 CVLQGHGDTAVCHFFWRSTPWTLPISNIAQ-CGSVWTCVAVTVDRFLAVNYPLHS 159


>AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical
           protein Y18H1A.9 protein.
          Length = 488

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 19/61 (31%), Positives = 32/61 (52%)
 Frame = -2

Query: 538 LNYLMFYDLKIYFWKLCSLFN*KIHSSIN*QLTTSTFKSVFNRSFTYRM*LIDYVSKTLV 359
           L+ L   D+K+ FWK  S    ++H  I+ + T    K + + S  + + +ID V K +V
Sbjct: 37  LHNLYLNDVKLDFWKSPSEAGKEVHVMISDEKTQQFMKELDDHSIKHSV-MIDDVQKVIV 95

Query: 358 E 356
           E
Sbjct: 96  E 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,310,769
Number of Sequences: 27780
Number of extensions: 494917
Number of successful extensions: 1067
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3297288728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)