Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M07
         (1218 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    31   2.2  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    31   2.2  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    31   2.2  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    29   6.7  

>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +2

Query: 176 PPXGGFXPXXFXPPXXXXPXGG--XKKKXSPPXXFXGGGXXP 295
           PP GG  P    PP    P GG        PP  F GG   P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +2

Query: 176 PPXGGFXPXXFXPPXXXXPXGG--XKKKXSPPXXFXGGGXXP 295
           PP GG  P    PP    P GG        PP  F GG   P
Sbjct: 746 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 16/42 (38%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
 Frame = +2

Query: 176 PPXGGFXPXXFXPPXXXXPXGG--XKKKXSPPXXFXGGGXXP 295
           PP GG  P    PP    P GG        PP  F GG   P
Sbjct: 329 PPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 21/71 (29%), Positives = 23/71 (32%), Gaps = 1/71 (1%)
 Frame = -2

Query: 437 PPPGXPXFXPXXXXXXXXXTPGILKPPXXPXEXXXXXXFFXKNFFFXXGXXPPXKXXGXG 258
           PPPG P + P          P    PP            F +   F  G  PP    G G
Sbjct: 708 PPPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQG--FNAGAPPPPFGRGAG 765

Query: 257 -KXFFXPPPXG 228
               F PPP G
Sbjct: 766 PMSSFPPPPRG 776


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,624,756
Number of Sequences: 27780
Number of extensions: 283413
Number of successful extensions: 281
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3359895476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)