Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M05
         (1372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0059 - 394001-394708                                             31   2.8  
07_03_1160 - 24430240-24431268                                         30   4.9  

>08_01_0059 - 394001-394708
          Length = 235

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 19/69 (27%), Positives = 19/69 (27%)
 Frame = +3

Query: 1035 PRPXAXXXPXPPXVXXXXPXXGPXXPXXPXRXTXXXRXXXVXXXXRXXPXXXXXAPPXPX 1214
            P P     P PP      P   P  P  P R                 P     APP P 
Sbjct: 3    PPPPPRRAPPPPATPPPPPRRAPPPPSPPIRPP----PPPTPRPYAPPPPSHPLAPPPPH 58

Query: 1215 XVPPXAXPP 1241
              PP   PP
Sbjct: 59   ISPPAPVPP 67


>07_03_1160 - 24430240-24431268
          Length = 342

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 17/72 (23%), Positives = 20/72 (27%)
 Frame = +3

Query: 1008 PPXXNPXXXPRPXAXXXPXPPXVXXXXPXXGPXXPXXPXRXTXXXRXXXVXXXXRXXPXX 1187
            PP  NP   P+P     P P  +        P  P  P           V       P  
Sbjct: 125  PPQPNPNGPPKPDMPPMPKPDGLPNTYEPSRPDQPPQPISDGPPLPNPNVPPKPDQPPQP 184

Query: 1188 XXXAPPXPXXVP 1223
                PP P  +P
Sbjct: 185  IPNGPPKPDMLP 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,780,191
Number of Sequences: 37544
Number of extensions: 114046
Number of successful extensions: 478
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4329950544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)