Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M03
         (1335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    32   0.21 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.83 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   1.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 24/89 (26%), Positives = 26/89 (29%)
 Frame = -2

Query: 614 KXXPPPPPPXXGXXXAXXXXGGGXXKXXXPPXPRXXXPEGGXXXXHNPPXRAXXKSXRGX 435
           K  PPPPPP           G G      PP P              P  R+        
Sbjct: 308 KKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPR 367

Query: 434 GRAPNTXTXGAPGRGPRXXXXKNXPHPPP 348
             AP+T     P    R     N P PPP
Sbjct: 368 S-APSTGRQPPPLSSSR--AVSNPPAPPP 393



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 737 PPPPPPPXXXXSXPPXLPXGGP 802
           PP P PP    S PP LP   P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAP 436



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
 Frame = -3

Query: 628 PPPGXKXXPPP-PPRXPAXXXPXXXXGGGGXXPXXPXPPXXPPL 500
           P P     PP  PP  P    P    G     P  P  P  PPL
Sbjct: 416 PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPL 459



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 740 PPPPPPXXXXSXPPXLPXGGP 802
           PP  PP    S PP LP G P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAP 444



 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
 Frame = -3

Query: 628 PPPGXKXXPPPPPR-XPAXXXPXXXXGGGGXXPXXPXPPXXPPLR 497
           PP G    PPPPPR  P+                 P PP   P R
Sbjct: 354 PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGR 398



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 1/42 (2%)
 Frame = -1

Query: 624 PQGXXXXPPPPPXXRPXPG-XXXTXGGXXKXPXXPXPPXXXP 502
           PQG    PPPPP   P  G               P PP   P
Sbjct: 355 PQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.83
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 737 PPPPPPPXXXXSXPPXLPXGGP 802
           PPPPPPP    + PP  P   P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -3

Query: 628 PPPGXKXXPPPPPRXPAXXXPXXXXGGGGXXPXXPXPPXXPP 503
           P P     PPP P       P    G  G  P  P PP  PP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP--PP 783



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
 Frame = +2

Query: 713 PXXXPXXXPPPPPPPXXXXSXPPXLPXG----GPXP 808
           P   P   P PPP P      PP  P G    GP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
 Frame = -3

Query: 628 PPPGXKXXPPPPPR----XPAXXXPXXXXGGGGXXPXXPXPP 515
           P P     P PPP      P    P     G G  P  P PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/33 (33%), Positives = 12/33 (36%)
 Frame = +3

Query: 711 SPGXLPXXXPPPPPPXXXXXPXPPXSXXGGPXP 809
           +P   P   PPP P      P PP     G  P
Sbjct: 743 TPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +2

Query: 725 PXXXPPPPPPPXXXXSXPPXLPXGGPXP 808
           P   PPPPPPP      PP  P   P P
Sbjct: 5   PPGNPPPPPPPPGF--EPPSQPPPPPPP 30



 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
 Frame = +2

Query: 725 PXXXPPPPPPP-XXXXSXPPXLPXGG 799
           P   PPPPPPP     S PP  P  G
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31



 Score = 27.1 bits (57), Expect = 5.9
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +2

Query: 713 PXXXPXXXPPPPPPP 757
           P   P   PPPPPPP
Sbjct: 16  PGFEPPSQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
 Frame = +3

Query: 504 GGXXGGXGXXGFXPPP-PXXXXGXXXAGXRGGGGGXXFXPGGGP 632
           GG  GG G     PPP P    G    G  G   G     GGGP
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP 230


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/44 (34%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
 Frame = -1

Query: 630  AXPQGXXXXPPPPPX-XRPXPGXXXTXGGXXKXPXXPXPPXXXP 502
            A PQ     PPPPP    P P       G    P  P P    P
Sbjct: 1698 APPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 737 PPPPPPPXXXXSXPPXLPXG 796
           PPPPPPP      P   P G
Sbjct: 371 PPPPPPPELLNHSPKSRPLG 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.154    0.542 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,876
Number of Sequences: 5004
Number of extensions: 28231
Number of successful extensions: 380
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 733268682
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)