Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M03
         (1335 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.43 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   7.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   7.9  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 737  PPPPPPP 757
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 3.4
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 737  PPPPPPP 757
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 22.6 bits (46), Expect(2) = 0.43
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 605  PPPPPPXXG 579
            PPPPPP  G
Sbjct: 1357 PPPPPPSSG 1365



 Score = 22.2 bits (45), Expect(2) = 0.43
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 620  RXKXXPPPPPP 588
            R +  PPPPPP
Sbjct: 1351 RQQQPPPPPPP 1361


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 726 PXXXPPPPPP 755
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 7.9
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 628  PPPGXKXXPPPPPR 587
            P  G    PPPPPR
Sbjct: 1852 PVSGSPEPPPPPPR 1865


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.154    0.542 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,210
Number of Sequences: 438
Number of extensions: 8025
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 46104192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)