Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M02
         (1167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    48   3e-06
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    34   0.044
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    27   5.0  

>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
 Frame = +1

Query: 445 DSQNVTEHHVQPKLYLRNLFFRTVYLLLAEINPIFVLEGDAPELKRDVMATRNAVQFRGA 624
           D Q +     +   +L  +F+RT+ ++   I P FV +G  P LK   +A R A   +  
Sbjct: 50  DGQQLMNEQGETTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAR 109

Query: 625 APRSE-KACSSEKLPNVSRKRFKNVLK----ECETLLKSMGVICLKGSGEAEATCAQLNA 789
             + E K   + ++ +   KR   V +    E + LL+ MG+  +    EAEA CA L  
Sbjct: 110 EDQEETKEVGTAEMVDRFAKRTVKVTRQHNDEAKRLLELMGIPFVNAPCEAEAQCAALAR 169

Query: 790 EG 795
            G
Sbjct: 170 SG 171


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 33.9 bits (74), Expect = 0.044
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +1

Query: 502 FFRTVY-LLLAEINPIFVLEGDAPELKRDVMATRNA 606
           FFR +  LL   I P+FV +G AP LKR  +  R A
Sbjct: 58  FFRRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQA 93



 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +1

Query: 694 VLKECETLLKSMGVICLKGSGEAEATCAQL 783
           ++KEC+ LL+  G+  +    EAEA C++L
Sbjct: 756 MIKECQELLRLFGLPYIVAPQEAEAQCSKL 785


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 743 RHITPILLRRVSHSFKTFLNLFLETLGS 660
           R + PI +RR+  S KTF+N   ET  S
Sbjct: 57  RRVLPISVRRILSSRKTFVNYLDETPNS 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,652,593
Number of Sequences: 5004
Number of extensions: 72411
Number of successful extensions: 166
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)