Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_M02
(1167 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY303575-1|AAP57297.1| 382|Caenorhabditis elegans cell death-re... 38 0.014
AC024791-9|AAF60653.1| 382|Caenorhabditis elegans Cell-death-re... 38 0.014
AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical... 30 2.7
U00052-5|AAK21423.1| 289|Caenorhabditis elegans Hypothetical pr... 29 6.3
U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical pr... 29 8.3
U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical pr... 29 8.3
AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical... 29 8.3
AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical ... 29 8.3
>AY303575-1|AAP57297.1| 382|Caenorhabditis elegans cell
death-related nuclease 1 protein.
Length = 382
Score = 37.9 bits (84), Expect = 0.014
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Frame = +1
Query: 487 YLRNLFFRTVYLLLAEINPIFVLEGDAPELK---RDVMATRNAVQFRGAAPRSEK--ACS 651
+L + RTV + + P++V +G P++K + + R A + EK
Sbjct: 63 HLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGDVKE 122
Query: 652 SEKLPNVSRKRFKNVLKECETLLKSMGVICLKGSGEAEATCAQLNAEG 795
+EK K K E + LL MG+ ++ EAEA CA L G
Sbjct: 123 AEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAG 170
>AC024791-9|AAF60653.1| 382|Caenorhabditis elegans
Cell-death-related nuclease protein1 protein.
Length = 382
Score = 37.9 bits (84), Expect = 0.014
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Frame = +1
Query: 487 YLRNLFFRTVYLLLAEINPIFVLEGDAPELK---RDVMATRNAVQFRGAAPRSEK--ACS 651
+L + RTV + + P++V +G P++K + + R A + EK
Sbjct: 63 HLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEKALTEAKEKGDVKE 122
Query: 652 SEKLPNVSRKRFKNVLKECETLLKSMGVICLKGSGEAEATCAQLNAEG 795
+EK K K E + LL MG+ ++ EAEA CA L G
Sbjct: 123 AEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAG 170
>AC006696-10|AAF39990.1| 228|Caenorhabditis elegans Hypothetical
protein W08E12.1 protein.
Length = 228
Score = 30.3 bits (65), Expect = 2.7
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 646 CSSEKLPNVSRKRFKNVLKECETLLKSMG 732
CS++++P+ K F+ + KEC+ ++ S G
Sbjct: 90 CSTKEIPHEQSKIFEEISKECDHIMNSAG 118
>U00052-5|AAK21423.1| 289|Caenorhabditis elegans Hypothetical
protein K02F3.8 protein.
Length = 289
Score = 29.1 bits (62), Expect = 6.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 534 NKSYICIGRRCTRTQKRCNGYSKCCP 611
N ++ C+G +K CN Y K CP
Sbjct: 260 NYNFYCVGDMSPEHEKFCNSYKKNCP 285
>U80448-6|AAO12417.1| 687|Caenorhabditis elegans Hypothetical
protein F59A3.2b protein.
Length = 687
Score = 28.7 bits (61), Expect = 8.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 790 QHLIGHMLLQLLRYL*DISLPYS*EEFHIPLKHF*ISF 677
Q ++ H LLQLLR++ +SL FH + F +SF
Sbjct: 446 QSMLAHTLLQLLRFVVCLSLNTIRHAFHFHRETFTVSF 483
>U80448-5|AAB37819.1| 975|Caenorhabditis elegans Hypothetical
protein F59A3.2a protein.
Length = 975
Score = 28.7 bits (61), Expect = 8.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -3
Query: 790 QHLIGHMLLQLLRYL*DISLPYS*EEFHIPLKHF*ISF 677
Q ++ H LLQLLR++ +SL FH + F +SF
Sbjct: 446 QSMLAHTLLQLLRFVVCLSLNTIRHAFHFHRETFTVSF 483
>AL034393-11|CAA22324.2| 2417|Caenorhabditis elegans Hypothetical
protein Y18D10A.13 protein.
Length = 2417
Score = 28.7 bits (61), Expect = 8.3
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Frame = -2
Query: 650 EQAFSDLGA--APRNWTAFRVAITSLLSSGASPSNTNIGFISANSRYTVLKNRFLRYNFG 477
E AF L A APR T R+ + L+SSG + ++ + SA L NR +R G
Sbjct: 1220 ETAFRILTALLAPRGATGNRMLLNCLVSSGTTTTSDS----SAEHSLVELMNRHVRAILG 1275
Query: 476 WTWCSVTF*LSQTQPERXTAIVSPRNFYTHFI*TYYYNKTVIKFQSLRVTTLIRA*MXRL 297
+ S + + + T + HF+ +Y+ N + +T+L + + L
Sbjct: 1276 QHFWSAPA-SDEEKHKHITLLELLITISLHFLRSYFLNSPISPVTEADLTSLWKCKISAL 1334
Query: 296 LGFC 285
C
Sbjct: 1335 EFLC 1338
>AJ250261-1|CAB59919.1| 2417|Caenorhabditis elegans hypothetical
protein protein.
Length = 2417
Score = 28.7 bits (61), Expect = 8.3
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 2/124 (1%)
Frame = -2
Query: 650 EQAFSDLGA--APRNWTAFRVAITSLLSSGASPSNTNIGFISANSRYTVLKNRFLRYNFG 477
E AF L A APR T R+ + L+SSG + ++ + SA L NR +R G
Sbjct: 1220 ETAFRILTALLAPRGATGNRMLLNCLVSSGTTTTSDS----SAEHSLVELMNRHVRAILG 1275
Query: 476 WTWCSVTF*LSQTQPERXTAIVSPRNFYTHFI*TYYYNKTVIKFQSLRVTTLIRA*MXRL 297
+ S + + + T + HF+ +Y+ N + +T+L + + L
Sbjct: 1276 QHFWSAPA-SDEEKHKHITLLELLITISLHFLRSYFLNSPISPVTEADLTSLWKCKISAL 1334
Query: 296 LGFC 285
C
Sbjct: 1335 EFLC 1338
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,121,147
Number of Sequences: 27780
Number of extensions: 402731
Number of successful extensions: 918
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3182509690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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