Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_M02
         (1167 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   6.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   6.8  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   9.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   9.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   9.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   9.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   9.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   9.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   9.0  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 701 RNVKLFSRVWE*YVLKVAEKLKQHVPN*MLKVYV 802
           RN+    R  E  VL+V+  L++H    +++VYV
Sbjct: 220 RNLTFVRREGEFSVLQVSFNLQRHTGYFLIQVYV 253


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 6.8
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +2

Query: 875 VHSSKHIIVIA*TIVHGNFXCETHQNLQF 961
           VH + H  ++     H  F CE HQ   F
Sbjct: 281 VHHANHHAILG----HSGFLCERHQKRYF 305


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 571 ELKRDVMATRNAVQFRGAAPRSEKACSSEKLPNVSRKRFKNVLKECETLL 720
           ELKRD++   + +  R     S+     E++ N+  K   N + E  T+L
Sbjct: 146 ELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNK--TNEITEHRTVL 193


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 571 ELKRDVMATRNAVQFRGAAPRSEKACSSEKLPNVSRKRFKNVLKECETLL 720
           ELKRD++   + +  R     S+     E++ N+  K   N + E  T+L
Sbjct: 146 ELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNK--TNEITEHRTVL 193


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 571 ELKRDVMATRNAVQFRGAAPRSEKACSSEKLPNVSRKRFKNVLKECETLL 720
           ELKRD++   + +  R     S+     E++ N+  K   N + E  T+L
Sbjct: 146 ELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNK--TNEITEHRTVL 193


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 571 ELKRDVMATRNAVQFRGAAPRSEKACSSEKLPNVSRKRFKNVLKECETLL 720
           ELKRD++   + +  R     S+     E++ N+  K   N + E  T+L
Sbjct: 146 ELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNK--TNEITEHRTVL 193


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 571 ELKRDVMATRNAVQFRGAAPRSEKACSSEKLPNVSRKRFKNVLKECETLL 720
           ELKRD++   + +  R     S+     E++ N+  K   N + E  T+L
Sbjct: 146 ELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNK--TNEITEHRTVL 193


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 571 ELKRDVMATRNAVQFRGAAPRSEKACSSEKLPNVSRKRFKNVLKECETLL 720
           ELKRD++   + +  R     S+     E++ N+  K   N + E  T+L
Sbjct: 146 ELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNK--TNEITEHRTVL 193


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 9.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 571 ELKRDVMATRNAVQFRGAAPRSEKACSSEKLPNVSRKRFKNVLKECETLL 720
           ELKRD++   + +  R     S+     E++ N+  K   N + E  T+L
Sbjct: 146 ELKRDIINPEDVMLKRRTGEGSKPIFEREEIKNILNK--TNEITEHRTVL 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,436
Number of Sequences: 438
Number of extensions: 4837
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 39644829
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)