Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L24
         (1122 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ZPE9 Cluster: MKIAA3013 protein; n=7; Mus musculus|Re...    34   5.8  

>UniRef50_Q6ZPE9 Cluster: MKIAA3013 protein; n=7; Mus musculus|Rep:
           MKIAA3013 protein - Mus musculus (Mouse)
          Length = 1461

 Score = 34.3 bits (75), Expect = 5.8
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 287 VNSSFTT*SRV--QNKVPHYGYARLSGRESSRRVTSVARPVQRPSDVAGRRRPSHRAHAT 114
           V SS  T S+   +N VPH    +LS   +  +V +VA+P +   D A + R       +
Sbjct: 789 VESSANTDSKQLSENSVPHSSEDKLSSDPAVEKVETVAQPAESLVDKAPKPRTRRSRFHS 848

Query: 113 PATCW 99
           P+T W
Sbjct: 849 PSTTW 853


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,330,178
Number of Sequences: 1657284
Number of extensions: 11660285
Number of successful extensions: 28767
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 27638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28750
length of database: 575,637,011
effective HSP length: 102
effective length of database: 406,594,043
effective search space used: 110186985653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)