Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_L22
(1123 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104... 81 2e-15
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 32 0.72
04_03_0857 + 20352331-20352582,20352740-20352951,20353047-203533... 31 1.7
04_03_0858 + 20357519-20357573,20358072-20358119,20360675-203609... 31 2.2
06_01_0210 - 1596578-1596868,1598550-1598828,1600503-1600511,160... 30 2.9
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 30 2.9
03_05_0065 + 20450814-20452748 30 3.8
01_06_0513 - 29944888-29945943 30 3.8
03_01_0113 + 905535-905840,906601-906812,906929-907196,907314-90... 29 5.1
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 6.7
06_01_0553 + 3942907-3943617 29 6.7
10_08_0351 - 17069974-17070232,17070470-17071751,17071908-170719... 29 8.9
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 29 8.9
09_04_0529 + 18356964-18358307,18359829-18359944,18360036-183601... 29 8.9
>01_06_1430 -
37309737-37309946,37310049-37310100,37310348-37310427,
37310538-37310606,37310710-37310843,37311173-37311332,
37311483-37311554,37312113-37312246,37312386-37312521,
37313273-37313416
Length = 396
Score = 81.0 bits (191), Expect = 2e-15
Identities = 56/143 (39%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Frame = +1
Query: 175 AYAAPANFLEIDVLNPVTTMGVGKKRYTDYEVRMRTNLPVFKVKDSSVRRRYSDFEWLRN 354
A AA FL I V +PV MG G + Y Y V +TNLP F+ ++ V RRYSDFEWL +
Sbjct: 15 ASAAGVPFLSISVTDPVK-MGTGVQAYISYRVITKTNLPDFEGQEKIVIRRYSDFEWLHD 73
Query: 355 EL-ERDSKIVVPPLPGKALKRQLPFRXXXXXXXXXXXXXXXKGLEVFINKIAGHPLAQNE 531
L E+ I +PPLP K + F + L++F+N+IA HP +
Sbjct: 74 RLAEKYKGIFIPPLPEKNAVEKFRF-------SKEFIELRRQALDLFVNRIASHPELKQS 126
Query: 532 RCLHMFLQ--EPTID--RSYVPG 588
L +FLQ E +D RSY G
Sbjct: 127 GDLKIFLQADEEKMDRERSYETG 149
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 32.3 bits (70), Expect = 0.72
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = +3
Query: 456 IYRGPQKRSGSVHQQDSRAPAGAERALPPHVPAGAHHRQELRARQDQEHITVHAAPSPEP 635
I G Q S + +P A PPH PA + + T AP P P
Sbjct: 64 IIPGRQAASRAPSPPAPPSPPQASAPSPPHAPAPSPPQAPAMTPPQAPAPTPPQAPRPAP 123
Query: 636 RLCSSPRAPPTSGSR 680
+P+APP + +R
Sbjct: 124 SKSRAPQAPPPAPTR 138
>04_03_0857 +
20352331-20352582,20352740-20352951,20353047-20353308,
20353418-20353726
Length = 344
Score = 31.1 bits (67), Expect = 1.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 627 PEPRLCSSPRAPPTSGSRT 683
P P++C SP PP +G+RT
Sbjct: 24 PPPKICGSPGGPPVTGTRT 42
>04_03_0858 +
20357519-20357573,20358072-20358119,20360675-20360922,
20361152-20361363,20361480-20361741,20361832-20362143
Length = 378
Score = 30.7 bits (66), Expect = 2.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 627 PEPRLCSSPRAPPTSGSRT 683
P P++C SP PP +G+RT
Sbjct: 57 PPPKICGSPGGPPITGTRT 75
>06_01_0210 -
1596578-1596868,1598550-1598828,1600503-1600511,
1600713-1600781
Length = 215
Score = 30.3 bits (65), Expect = 2.9
Identities = 21/79 (26%), Positives = 32/79 (40%)
Frame = +3
Query: 450 GGIYRGPQKRSGSVHQQDSRAPAGAERALPPHVPAGAHHRQELRARQDQEHITVHAAPSP 629
G + RG + G V +++ P+ H G HHR A Q++ T+H
Sbjct: 110 GLVTRGKDSKPGYVGEEEHSDPSNLAHPPVEHRQLGPHHRPHTSA-QNRIIRTIHHCHCN 168
Query: 630 EPRLCSSPRAPPTSGSRTL 686
P L R P S + +L
Sbjct: 169 SPGLVGVCRPKPHSDTYSL 187
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 30.3 bits (65), Expect = 2.9
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +3
Query: 588 QDQEHIT-VHAAPSPEPRLCSSPRAPPTS 671
+D +HI +H P P+P P+ PPTS
Sbjct: 74 EDDDHIVHLHGEPLPQPPYFPEPKPPPTS 102
>03_05_0065 + 20450814-20452748
Length = 644
Score = 29.9 bits (64), Expect = 3.8
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -2
Query: 603 CVPDLAGHVAPVDGGLLQEHVEAALVLRQRVPGYLVDEHFQTFSAVL 463
C PD+ + +DG + H+E A + R+P Y + + ++ VL
Sbjct: 282 CTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328
>01_06_0513 - 29944888-29945943
Length = 351
Score = 29.9 bits (64), Expect = 3.8
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 292 VFKVKDSSVRRRYSDFEWLRNELERDSKI 378
V++ +SS R+ ++ EWLR +L+RD ++
Sbjct: 278 VYERVESSKRQHMAEVEWLRRDLQRDLEV 306
>03_01_0113 +
905535-905840,906601-906812,906929-907196,907314-907595
Length = 355
Score = 29.5 bits (63), Expect = 5.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 621 PSPEPRLCSSPRAPPTSGSR 680
P P PR+C SP PP + R
Sbjct: 40 PPPPPRICGSPGGPPVAAPR 59
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 6.7
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 504 SRAPAGAERALPPHVPAGAHHRQELRARQDQEHITVHAAPSPEPRLCSSPRAPPT 668
S P+ LPP +PA A+ R A +T AP+P P +P+ P T
Sbjct: 724 SNGPSAPAPPLPPPLPAAANKRNP-PAPPPPPLMTGKKAPAPPPPPPQAPKPPGT 777
>06_01_0553 + 3942907-3943617
Length = 236
Score = 29.1 bits (62), Expect = 6.7
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 582 ARQDQEHITVHAAPSPEPRLCSSPRA---PPTSGSR 680
AR+D+ + V P P P+L PRA PP S +R
Sbjct: 106 ARRDRAAVAVAPRPPPPPQLWKPPRARAPPPPSATR 141
>10_08_0351 -
17069974-17070232,17070470-17071751,17071908-17071969,
17072109-17072181,17072399-17072466,17073023-17073207,
17073311-17073452,17073665-17073720,17074003-17074056,
17074679-17074782,17075012-17075112,17075717-17075790,
17076482-17076560,17076668-17076744,17076875-17076931,
17077058-17077168,17077254-17077334
Length = 954
Score = 28.7 bits (61), Expect = 8.9
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +1
Query: 580 VPGKIRNT*LYTPRRHQSRGFAAVLAPHRHRGVARWCDSRSLCSTEVDWN---HHRDYGA 750
+PG + ++ R ++ +++VL+P H G+ + C+ + S DWN H Y A
Sbjct: 127 IPGLCETSPIFVSRDGGNKKYSSVLSPGHHEGLKK-CNDSGISSW--DWNLSGQHSTYHA 183
Query: 751 XVTEA 765
A
Sbjct: 184 LFPRA 188
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 28.7 bits (61), Expect = 8.9
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 480 SGSVHQQDSRAPAGAERALPPHVPAGAHHRQELRARQDQEHITVH 614
SG H + A A + PP P +HR AR D E + +H
Sbjct: 196 SGGDHGDATAAAAASREVAPPPRPRDVYHR-PFTARDDDELLRLH 239
>09_04_0529 +
18356964-18358307,18359829-18359944,18360036-18360133,
18360234-18360418
Length = 580
Score = 28.7 bits (61), Expect = 8.9
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -2
Query: 405 SFAGQGRYDYLAVPLQFIPEPLEVAIPPSDARIFHFENG*VCPHTNFVIR 256
S AG+ R ++A + P EVA P+ R F G +CP TN V+R
Sbjct: 61 SAAGERRRRHVAAYHRAGPRR-EVAFDPATVRAAIFTCGGLCPGTNTVVR 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,951,344
Number of Sequences: 37544
Number of extensions: 527110
Number of successful extensions: 1954
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1946
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3386386840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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