Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_L20
(1218 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 161 2e-40
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 71 4e-13
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 60 8e-10
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 54 5e-08
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 52 1e-07
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 51 4e-07
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 50 9e-07
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 49 1e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 48 3e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 5e-06
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 47 6e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 2e-05
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 43 1e-04
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 42 2e-04
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 42 2e-04
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 42 2e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 42 2e-04
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 41 3e-04
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 40 5e-04
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 40 7e-04
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 40 7e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 0.001
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 39 0.001
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 0.001
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 39 0.002
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 39 0.002
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 38 0.004
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 37 0.005
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 36 0.011
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 36 0.015
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.035
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.035
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch... 33 0.061
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.080
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.080
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.32
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.57
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 30 0.57
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 1.7
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 2.3
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 28 3.0
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 3.0
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 28 3.0
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 27 4.0
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 4.0
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 9.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 9.2
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 161 bits (390), Expect = 2e-40
Identities = 82/196 (41%), Positives = 123/196 (62%), Gaps = 8/196 (4%)
Frame = +3
Query: 171 YNQLXGNAAHGGGASQAH--NSAE-APGRAXAXKLFVGGLSWEPTDKELRDHFGAYGEIX 341
YN+ +A G GA +++ N+ E +P K+F+GGL+WE TD LRD+F +GE+
Sbjct: 132 YNE-NQSALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVL 190
Query: 342 XINVKXDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKARH-----GKI 506
V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R K+
Sbjct: 191 DCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPREEQEKTAKM 249
Query: 507 FVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 686
FVGG+ + +++E RNFF++FG +L+ + DK + +GF F+T+E+E V + P
Sbjct: 250 FVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPY 309
Query: 687 RTIGGKEVDVKRATPK 734
TI GK V+VKRATPK
Sbjct: 310 ITIHGKPVEVKRATPK 325
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 70.5 bits (165), Expect = 4e-13
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 23/183 (12%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKVMAA- 440
+FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ PE+ +AA
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 441 GEHTINNKKV-----DPKK------AKARHGK-----------IFVGGLSSEISDDEIRN 554
G I+ + V +P+ A+ R G +FVG LS ++D++
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLST 384
Query: 555 FFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVDVKRATPK 734
F G I + +P D + KGF ++TF ++ I G+ + +TP+
Sbjct: 385 AFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPR 444
Query: 735 PDG 743
G
Sbjct: 445 TGG 447
Score = 44.8 bits (101), Expect = 2e-05
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN-DLLKT 680
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ + +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAAN 324
Query: 681 PKRTIGGKEVDVKRATPKPDGP 746
+ I G+ V++ + P+P P
Sbjct: 325 GTKEIDGRMVNLDLSNPRPANP 346
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 59.7 bits (138), Expect = 8e-10
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Frame = +3
Query: 210 ASQAHNSAEAPGRAXAXKLFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGF 389
+S A S AP A L+VG L T+ L + F + G + I V D T RS G+
Sbjct: 67 SSVATPSGTAPTSA---SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGY 123
Query: 390 AFIVFKAPESIDKVMAAGEHTINN--------KKVDPKKAKARHGKIFVGGLSSEISDDE 545
A++ F E +K + +T+ + DP K G +F+ L I +
Sbjct: 124 AYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKA 183
Query: 546 IRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 665
+ + FS FG IL ++ D+ N KG+ F+ F+S + N
Sbjct: 184 LHDTFSAFGKILSCKVAVDELGN-AKGYGFVHFDSVESAN 222
Score = 41.1 bits (92), Expect = 3e-04
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKVM 434
LF+ L E D+ L+ F A+G I + D G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAV 421
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 53.6 bits (123), Expect = 5e-08
Identities = 23/63 (36%), Positives = 38/63 (60%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKVMAAG 443
LFVG L +E TD +L++HFG G+I + + +TG+ +GF F+ F ++ K M G
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELG 289
Query: 444 EHT 452
++
Sbjct: 290 HNS 292
Score = 33.1 bits (72), Expect = 0.080
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 644
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 52.4 bits (120), Expect = 1e-07
Identities = 30/116 (25%), Positives = 61/116 (52%), Gaps = 5/116 (4%)
Frame = +3
Query: 414 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 593
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 594 PFDKTKNQRK----GFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKPDGP 746
PF + + + G F+TF +++ V+ ++T +T+ +E+ V++A P + P
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARPVQEQP 131
Score = 34.7 bits (76), Expect = 0.026
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +3
Query: 189 NAAHGGGASQAHNSAEAPGRAXAXKLFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPN 368
+AA A Q++ A+ +A ++FVG LS E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQ---QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRV 80
Query: 369 TGRSR----GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 482
+R G AF+ F E +DK + T+N K +D ++
Sbjct: 81 RRGTRLVPSGIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 50.8 bits (116), Expect = 4e-07
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +3
Query: 444 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 623
E TI K + K + + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 624 GFCFITFESEQVVNDLLKT 680
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 49.6 bits (113), Expect = 9e-07
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Frame = +3
Query: 255 AXKLFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKVM 434
A ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P + +
Sbjct: 54 AQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
Query: 435 AAGEHTINNK--KVDPKK 482
++ + KV PK+
Sbjct: 114 LLNGSMLHERPLKVTPKR 131
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 674
++VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 49.2 bits (112), Expect = 1e-06
Identities = 22/61 (36%), Positives = 34/61 (55%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKVMAAG 443
+FVG L++E ++ L +FG G I + + DP T +GFA+I FK +DK +
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 444 E 446
E
Sbjct: 332 E 332
Score = 40.3 bits (90), Expect = 5e-04
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVND-LLKT 680
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ LL
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALLLN 331
Query: 681 PKRTIGGKEVDVKRA-TPKP 737
K+ G+ + + RA + KP
Sbjct: 332 EKKMPEGRTLRIMRAKSTKP 351
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 48.0 bits (109), Expect = 3e-06
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Frame = +3
Query: 423 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 593
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 594 PFDKTKNQRKGFCFITFES-EQVVNDLLKTPKRTIGGKEVDVKRA-TPKPDGP 746
+ +GF F++F + E+ + + + G+ ++V++A +P P
Sbjct: 133 MREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKAKRSRPHSP 185
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPE 416
LFV G++ + EL+ F +G + + + +P T SRGF F+ F E
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVE 153
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 47.2 bits (107), Expect = 5e-06
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 501 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 677
++F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 678 TPKRTIGGKEVDV 716
+ G+ + V
Sbjct: 384 LDAKPFQGRLLHV 396
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 46.8 bits (106), Expect = 6e-06
Identities = 22/79 (27%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +3
Query: 495 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 671
H ++FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 672 LKTPKRTIGGKEVDVKRAT 728
+ + IG + V + RAT
Sbjct: 88 REKNGKYIGSRPVKLSRAT 106
Score = 35.1 bits (77), Expect = 0.020
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +3
Query: 261 KLFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFK 407
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 2e-05
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 656
I++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPES 419
+++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 42.7 bits (96), Expect = 1e-04
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +3
Query: 444 EHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 602
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 603 KTKNQRKGFCFITF 644
KT ++KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
Score = 41.9 bits (94), Expect = 2e-04
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPES--IDKVMA 437
LFVG L + + + L+ HF G++ + + D +GR +G+AF+ F P++ I K +
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVEFINPKTDVISKALK 153
Query: 438 AGEHTI-NNKKVDPKKAKARHGK 503
HTI +K++ + GK
Sbjct: 154 F-HHTIYKERKINIELTAGGGGK 175
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 41.9 bits (94), Expect = 2e-04
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKVMA-A 440
+FV L+ T +EL D F G + + D +GRS+G A++ F +S+ +A +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 441 GEHTINNKKV-----DPKKAKARHG--------------KIFVGGLSSEISDDEIRNFFS 563
G+ + + K KAR ++ V + ++D++++ F
Sbjct: 302 GKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVKAIFE 361
Query: 564 EFGTILEVEMPFDKTKNQRKGFCFITFES 650
FG I V + D +N+ KGF +I + +
Sbjct: 362 PFGDIEFVHLQRD-DQNRSKGFGYIQYRN 389
Score = 35.5 bits (78), Expect = 0.015
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-T 680
+FV L++ ++ E+ +FF + G + + ++ DK + KG ++ F E V + +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 681 PKRTIG 698
KR +G
Sbjct: 302 GKRLLG 307
Score = 33.9 bits (74), Expect = 0.046
Identities = 15/53 (28%), Positives = 33/53 (62%)
Frame = +3
Query: 261 KLFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPES 419
+L V + + TD++++ F +G+I ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 41.9 bits (94), Expect = 2e-04
Identities = 23/75 (30%), Positives = 39/75 (52%)
Frame = +3
Query: 270 VGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKVMAAGEH 449
VG LS++ T+ +L D FG + I + DP T RSRGF ++ F+ +++ +A
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 450 TINNKKVDPKKAKAR 494
+ + V A+ R
Sbjct: 156 DLMGRPVRITVAEPR 170
Score = 36.3 bits (80), Expect = 0.009
Identities = 17/75 (22%), Positives = 39/75 (52%)
Frame = +3
Query: 510 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 689
VG LS +++++++ +FF E + + + D + +GF ++ FE+ ++ L
Sbjct: 98 VGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTERSRGFGYVEFETADTLSAALALSGE 155
Query: 690 TIGGKEVDVKRATPK 734
+ G+ V + A P+
Sbjct: 156 DLMGRPVRITVAEPR 170
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 41.5 bits (93), Expect = 2e-04
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +3
Query: 261 KLFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESI 422
++FV +S T ++LR HF ++GE+ +++K +P TG S G I F SI
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSI 148
Score = 34.3 bits (75), Expect = 0.035
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +3
Query: 501 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 665
++FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.5 bits (93), Expect = 2e-04
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +3
Query: 417 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 590
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 591 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT 692
M D+ GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
Score = 31.1 bits (67), Expect = 0.32
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFI-VFKAPESIDKVMAA 440
++VG LS+ T++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 441 GEHTINNKKVDPKKAKA-RHGKIFVGGLSSEISDDEIRNFF 560
+++ + + G+ + G S DE+R F
Sbjct: 94 SRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEF 134
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 41.1 bits (92), Expect = 3e-04
Identities = 22/67 (32%), Positives = 36/67 (53%)
Frame = +3
Query: 204 GGASQAHNSAEAPGRAXAXKLFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSR 383
G ++ +S R + L V LS + ++ELRD F +G I + + D TGR++
Sbjct: 184 GSGRESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243
Query: 384 GFAFIVF 404
GFAF+ +
Sbjct: 244 GFAFVSY 250
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 477 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 644
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 40.3 bits (90), Expect = 5e-04
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFK----APESIDKV 431
++VG L W +D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 39.9 bits (89), Expect = 7e-04
Identities = 18/75 (24%), Positives = 38/75 (50%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKVMAAG 443
+FVG + ++ +++++ + F G + + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 444 EHTINNKKVDPKKAK 488
+NN ++ P+K +
Sbjct: 65 VRKLNNSELGPRKIR 79
Score = 34.7 bits (76), Expect = 0.026
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKT 680
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 681 PKRTIGGKEVDVKRATPKP 737
+G +++ V+ + P
Sbjct: 69 NNSELGPRKIRVEFPSNDP 87
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 39.9 bits (89), Expect = 7e-04
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFK 407
+F+ LS++ + ++ F YG I I V + TG+S G+AF+VF+
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +3
Query: 474 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 596
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 31.5 bits (68), Expect = 0.24
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Frame = +3
Query: 189 NAAHGGGASQAHNSAEAPGRAXAXKLFVGGLSWEPTDKELRDHFGA-YGEIXXINVKXDP 365
N A GGG + S +A +FVG LS + ++ F + Y + DP
Sbjct: 168 NWASGGGLREKSIS-----KASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDP 222
Query: 366 NTGRSRGFAFIVF 404
T SRG+ F+ F
Sbjct: 223 QTNVSRGYGFVRF 235
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTG 374
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 39.1 bits (87), Expect = 0.001
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFK 407
+FV L +E T++EL +HF +G + + DP T RS G FI F+
Sbjct: 279 VFVRNLLFECTEQELYNHFRQFGPLAYAKLVKDPATDRSLGRGFIKFR 326
Score = 38.3 bits (85), Expect = 0.002
Identities = 24/69 (34%), Positives = 35/69 (50%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKVMAAG 443
LFV L+++ +L + F G I V +P TG +RG+ F+ F E D AA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAK 64
Query: 444 EHTINNKKV 470
E + NKK+
Sbjct: 65 E--LKNKKL 71
Score = 37.1 bits (82), Expect = 0.005
Identities = 20/78 (25%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 683
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF + K
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKEL 66
Query: 684 K-RTIGGKEVDVKRATPK 734
K + + G+ + + ATP+
Sbjct: 67 KNKKLHGRILRLDFATPR 84
Score = 31.5 bits (68), Expect = 0.24
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +3
Query: 417 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 590
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 591 MPFDKTKNQRKGFCFITFESEQVVNDLLK 677
+ D ++ G FI F E+ + L+
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 0.001
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 605
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 38.7 bits (86), Expect = 0.002
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 15/110 (13%)
Frame = +3
Query: 453 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI-------------LEVE 590
+NN K+ P + + I+VG + S +SD+EI FS++G + E
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKA 60
Query: 591 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKEVDVKRATPKP 737
PF KN + + F+ F + + + ++LK K T+G +++ +K P
Sbjct: 61 KPFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNP 109
Score = 31.9 bits (69), Expect = 0.19
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +3
Query: 303 ELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 482
+L D F +G I + PN+G S+G+ F+ F+ E+ + T+N V K+
Sbjct: 399 QLEDLFSPFGSILSSMLACYPNSGISKGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXI 347
++VG + +D+E+ HF YG++ I
Sbjct: 19 IYVGNIDSRLSDEEIIKHFSKYGQVESI 46
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 38.7 bits (86), Expect = 0.002
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXI-NVKXDPNTGRSRGFAFIVFKAPESID-KVMA 437
LFVG L ++ L D F A G++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 438 AGEHTINNKKVDPKKAKARHGK 503
+ NK + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
Score = 33.1 bits (72), Expect = 0.080
Identities = 26/137 (18%), Positives = 55/137 (40%), Gaps = 8/137 (5%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKV-MAA 440
+++G L + TD L + G + I++ D GF F F + ++
Sbjct: 13 IYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVEYACQIL 72
Query: 441 GEHTINNKKVDPKKAKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 599
+ + K + +A G +FVG L + + + + FS G +++
Sbjct: 73 NQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLVKAPQVA 132
Query: 600 DKTKNQRKGFCFITFES 650
+ KG+ F++++S
Sbjct: 133 RDENGRSKGYGFVSYDS 149
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 37.5 bits (83), Expect = 0.004
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 680
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 681 PKRTIGGKE--VDVKR 722
+ G+E V +KR
Sbjct: 161 NNAELDGEELFVSIKR 176
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 37.1 bits (82), Expect = 0.005
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFK 407
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.9 bits (79), Expect = 0.011
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +3
Query: 501 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQVVNDLLK 677
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++ K
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDEDKWQKCK 65
Query: 678 T--PKRTIGGKEVDVKRATP 731
+ T G ++ ++ A P
Sbjct: 66 SYLSNATFKGSKLRIEEARP 85
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +3
Query: 261 KLFVGGLSWEPTDKELRDHFGAYGEIXXINV--KXDPNTGRSRGFAFIVFKAPE 416
+++VGGLS +L F +G + + + K P G + FA++ F+ E
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 35.5 bits (78), Expect = 0.015
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDK 428
LFV L+ D++L F +G+I V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 32.3 bits (70), Expect = 0.14
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 662
+FV L+ D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.035
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 501 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 650
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +3
Query: 261 KLFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAPESIDKVMAA 440
K+++ L + ++ + +G++ + + G S+GF F FK P + ++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEVAISG 370
Query: 441 --GEHTINNK 464
G+ T NK
Sbjct: 371 LDGKDTYGNK 380
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 34.3 bits (75), Expect = 0.035
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 456 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 635
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 636 ITFESEQ 656
FE E+
Sbjct: 342 ACFEEEK 348
>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 274
Score = 33.5 bits (73), Expect = 0.061
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +3
Query: 510 VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKR 689
V L ++ + ++ + F F I V M +D+ + +G C + FE+ Q D KT +
Sbjct: 89 VENLHYQVLEKDVLSLFENFHPI-RVIMNYDRA-GRSEGSCDVYFETSQDAEDAQKTLQS 146
Query: 690 T-IGGKEVDVKRATP 731
T + G E+ + + +P
Sbjct: 147 TNLKGSEIQISKKSP 161
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 33.1 bits (72), Expect = 0.080
Identities = 17/88 (19%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 477 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESE 653
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I + +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEYATL 61
Query: 654 QVVNDLLKTPKRTIGGKEVDVKRATPKP 737
+ + ++ ++++V A +P
Sbjct: 62 EQAQKAVDEKNLSLLDEKLEVDFAFLEP 89
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 33.1 bits (72), Expect = 0.080
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +3
Query: 264 LFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAP 413
++VG + +E ++++ D F G + + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 31.1 bits (67), Expect = 0.32
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 644
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 31.1 bits (67), Expect = 0.32
Identities = 15/61 (24%), Positives = 31/61 (50%)
Frame = +3
Query: 534 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRTIGGKEVD 713
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+ + +
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPEPIFNNRFIK 308
Query: 714 V 716
+
Sbjct: 309 I 309
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.57
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +3
Query: 522 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 650
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 30.3 bits (65), Expect = 0.57
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 261 KLFVGGLSWEPTDKELRDHF-GAYGEIXXINVKXDPNTGRSRGFAFIVFKAP 413
K+ V L + T+ ++++ F + G +++ PN GRS+G A I+F P
Sbjct: 56 KIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 1.7
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +3
Query: 468 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 629
+ P K +F+GG++ + + +R+ F FG++ + + N R GF
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL----NHNYRHGF 445
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 28.3 bits (60), Expect = 2.3
Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 300 KELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 476
++L + F +G I + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 477 KKAKARHGK 503
A+ R +
Sbjct: 495 NYAEKREDR 503
Score = 27.9 bits (59), Expect = 3.0
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 432 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 611
M A E K KK + I+VG L S ++ F FG + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 612 NQRKG------FCFITFESE 653
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 593
+F+G L + I++DEIR FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 3.0
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 474 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 614
P++ + +GK L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 249 AXAXKLFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPN 368
A + +F+G L +KE+ + FG +G+I I + N
Sbjct: 296 AASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 593
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 27.5 bits (58), Expect = 4.0
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Frame = +3
Query: 234 EAPGRAXAXKLFVGGLSWEPTDKELRDHFGAYGEIXXINVKXDPNTGRSRGFAFIVFKAP 413
E P LF+ G+ E D ++R HF YG + + + R++ AF+ FK
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTR 257
Query: 414 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEI 548
S + +AA N ++ + K + GK +GG E+ + ++
Sbjct: 258 SSAE--IAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 381 RGFAFIVFKAPESIDKVMAAGEHTINNKK 467
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +3
Query: 504 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 683
++V L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = -3
Query: 1012 PPPSPXXXAPXVPVIRVFQSNXXPP*PP*PX*P*PPXP*LXYPPP*PP 869
P P+P P VP + PP PP P P P + PP PP
Sbjct: 1170 PVPAPSSGIPPVPK----PAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,036,830
Number of Sequences: 5004
Number of extensions: 52197
Number of successful extensions: 260
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 253
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 659412242
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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