Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L19
         (1208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      30   0.56 
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc...    29   0.98 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    27   5.2  
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc...    27   6.9  
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    26   9.1  
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz...    26   9.1  

>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 28/114 (24%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = +2

Query: 551 LSKTLEETKNESICHLELLSQDIDFTQNYLRRDLFDSPLWKRLN-DDQMKCNLNNIDTIN 727
           L K +E  K +S+ H E  +QD   T   ++RD+ +SP+ K+ + +D     L++ D + 
Sbjct: 131 LKKEIEYAKTKSLFH-EREAQDAIETMKKMKRDVKNSPIMKKSHEEDGDNKLLSSSDQLA 189

Query: 728 VIKQQAHTGNLRRGKAQVVAAFIEGVDRSVTDPLIILRDRTGSIKCTLHRDAWS 889
              + A   +  + K +   A  E          I + D   S+  +L +D  S
Sbjct: 190 KSTKHAAKNSPSKKKRKTSVATAEDASTDSVSSSIAISD--ASLSLSLMKDLLS 241


>SPAC6B12.05c |||chromatin remodeling complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 295

 Score = 29.5 bits (63), Expect = 0.98
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 671 KRLNDDQMKCNLNNIDTIN-VIKQQAHTGNLRRGKA 775
           +R N  + +     ++TIN ++K+Q++TG  RRG+A
Sbjct: 209 RRKNQSERRLEEEKMETINRLLKRQSNTGKPRRGRA 244


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 521 KRKFPGPAGLLSKTLEETKNESICHLELLSQDIDFTQNYLRRDL 652
           KRKF      ++KT+E+  N +I   EL +Q  + +  Y + +L
Sbjct: 19  KRKFEDALTFITKTIEQEPNPTIDLFELRAQVYEKSGQYSQAEL 62


>SPBC336.12c |cdc10||MBF transcription factor complex subunit
           Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 560 TLEETKNESICHLELLSQDIDFTQNYLRRDLFDSPLWKRLNDDQMKC 700
           T+ E  N+++   EL  Q   + +N  R +   + LW+R ++ + KC
Sbjct: 669 TVNENNNKNLSIAELKFQVAAYERNEARLNELANKLWQRNSNIKSKC 715


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 824 PLIILRDRTGSIKCTLHRDAWSTFSPYIVS 913
           P++++  + G   C L    W T SPY+ +
Sbjct: 245 PILVMCAKLGFYICRLLGSPWHTISPYVAA 274


>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 702

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 467 MPHWWTLLMHCMYAAEILISCYRFLLICIIFFSVGI 360
           MP WW+  MH     +   S Y + ++ +++  +GI
Sbjct: 579 MPGWWSDNMHSKAVQQEFCSLYSYRIVNLLWEILGI 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,854,191
Number of Sequences: 5004
Number of extensions: 71512
Number of successful extensions: 234
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)