Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L18
         (1166 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    30   0.54 
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    27   3.8  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    27   6.6  
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr...    27   6.6  

>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 811 LIGKAEFAIDKTKYERLVT-YIEAMKNVPAVKSYFL 915
           L+G AEF ++  +YER  T Y E +K+V  V   F+
Sbjct: 406 LVGYAEFLMEHEEYERAATLYAETLKSVEEVALKFI 441


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +1

Query: 496 LFDSNIINVYLDEKYPEIPLQASDPLRRAQDKILVESFAPAQSAYYTAAF--NAQALEPS 669
           +F+     V  DE+   + L  S  LR   D++    +    +  Y   F   A+A E +
Sbjct: 140 MFNDAFNEVIEDEEKRVVDLYPSS-LRTKIDELNDYFYDTVNNGVYKTGFATTAEAYEKN 198

Query: 670 MVETYHKGLEGLQKELETRSTKYLHGDEPGWVDYTLWPFLERFE 801
            V    +GL+ L++ L+     +L GD     D  L+  + RF+
Sbjct: 199 -VRVVFQGLDRLEQVLKESKGPFLLGDHLTETDVRLYTTIVRFD 241


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +1

Query: 388 IPYDLVFINLDQKPEWIFNFSPKGTVPALEYEPGKALFDSNIINVYLDEKYPEIPLQASD 567
           IP D++F+ +DQK    F  S          +   AL    I+  +LD+++  IP+   +
Sbjct: 237 IPGDVIFV-IDQKEHPRFKRSGDHLFYEAHVDLLTALAGGQIVVEHLDDRWLTIPIIPGE 295

Query: 568 PLRRAQDKIL 597
            +R  + K+L
Sbjct: 296 CIRPNELKVL 305


>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 367 LTLNAKNIPYDLVFINLDQK-PEWIFNFSPKGTVP 468
           L L  +N   D + IN D   P W   FSPK T+P
Sbjct: 91  LHLENQNSIVDSIHINADTVLPVWSEAFSPKSTLP 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,290,189
Number of Sequences: 5004
Number of extensions: 87303
Number of successful extensions: 212
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 625545148
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)