Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L16
         (1182 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    72   1e-13
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    30   0.72 
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   1.3  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    28   2.2  
SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   2.9  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    27   3.8  

>SPAC664.07c |rad9||checkpoint clamp complex protein
            Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 45/186 (24%), Positives = 90/186 (48%), Gaps = 7/186 (3%)
 Frame = +1

Query: 493  KSPAHIDKQVESLEMKLDPES-CKLIFCLKCKHGIVKTHFVSILDCKAMQAVYTKDTVPN 669
            +S +  D  VE++++ +   S C++IF   CKHG++KT+ +S    + + AV+ K    N
Sbjct: 114  ESASRKDVIVENVQISISTGSECRIIFKFLCKHGVIKTYKISYEQTQTLHAVFDKSLSHN 173

Query: 670  RITSPQRILNETLNSFQTSDDQVTLEATTKSLVIKNYIDS---NMDLTK-IIRTHVSLDP 837
                  +IL +    F    +++T++   + +++ ++ +    N D+ K   +T VS+D 
Sbjct: 174  NFQINSKILKDLTEHFGQRTEELTIQPLQERVLLTSFTEEVVHNRDILKQPTQTTVSIDG 233

Query: 838  AEFDNYIIGEETTITFTLKEFRXXXXXXXXXXXPXQLHFETTGRXAVFIVXNG--TTLEA 1011
             EF+   + E  ++T +L+EFR               ++   G+  +     G  + +EA
Sbjct: 234  KEFERVALNEGVSVTLSLREFRAAVILAEALGSSICAYYGVPGKPILLTFAKGKNSEIEA 293

Query: 1012 HLGLAT 1029
               LAT
Sbjct: 294  QFILAT 299


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 645 VH*RYSTKQNYFTSKNTKRNTEQLPN 722
           V+ RYS   + ++SKN  +NTE LPN
Sbjct: 265 VNTRYSMSWDCYSSKNIPKNTEALPN 290


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +1

Query: 667 NRITSPQRILNETLNSFQ-TSDDQVTLEATTKSLVIK-NYIDSNMDLTKIIRTHVSLD 834
           NR   PQ +LN    SFQ +S  Q ++    K+  +K + +  NM+ ++I  TH + D
Sbjct: 42  NRNFVPQNVLNNEYQSFQHSSTSQPSVLRQGKNAFLKPSQLSFNMNSSEISNTHWARD 99


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
 Frame = +1

Query: 442 NEGLKCKISMKSALNA---FKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHGIVKTHFV 612
           +E LK K+   +A+     FKS   +DK V+ L+  +D  + K++   K    I + +  
Sbjct: 84  DELLKKKVKELTAMKKTVPFKSEVELDKHVKQLQAAVDSGTLKIVDEKKYLREISQCNRT 143

Query: 613 --SILDCKAMQAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEA 750
             S ++  A+Q   + DT+ N +   +  LN++  S + SD  V + +
Sbjct: 144 RKSFVELNALQT--SIDTIRNELNELRDQLNDS-ESKKLSDKFVEIRS 188


>SPAC12B10.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 646 YTKDTVPNRITSPQRILNETLNSFQTSDDQ 735
           Y ++T  NR++S Q     TLN+FQ + +Q
Sbjct: 227 YKQNTTNNRVSSFQNSQYSTLNNFQNNSNQ 256


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 742 LEATTKSLVIKNYIDSNMDLTKIIRTHVSLDPAE 843
           LE+  +   IKN I+SN +L  I++  V+LD  E
Sbjct: 84  LESIVEDPSIKNLIESNAELLHIMKELVNLDREE 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,622,054
Number of Sequences: 5004
Number of extensions: 64130
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 635506058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)