Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L16
         (1182 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-20|CAC42372.2|  497|Caenorhabditis elegans Hypothetical...    47   3e-05
AF247970-1|AAF66431.1|  323|Caenorhabditis elegans cell cycle ch...    35   0.13 
Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical p...    29   6.4  

>AL031633-20|CAC42372.2|  497|Caenorhabditis elegans Hypothetical
            protein Y39A1A.23 protein.
          Length = 497

 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 44/206 (21%), Positives = 87/206 (42%), Gaps = 11/206 (5%)
 Frame = +1

Query: 457  CKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHGIVKTHFVSILDCKAM 636
            C++SMKSA   FK  A  +K     E ++DP++ +++  L+  + I +T    + +  +M
Sbjct: 74   CRLSMKSAQRIFKGVAFGEKNFVGCEFRIDPKAERMMVKLQMNYDIERTIHAKLREMGSM 133

Query: 637  --QAVYTKDTVPNRITSPQRILNETLNSFQTSDDQVTLEATTKSLVIKNY--IDS----N 792
              +  Y +    N IT         +      D +VT++ T   L I+N+  +D     N
Sbjct: 134  LHKPTYNRSGCRN-ITVVFASTLLPIFVQMKGDIEVTMKVTDDGLTIRNFHSLDGVTMFN 192

Query: 793  MDL---TKIIRTHVSLDPAEFDNYIIGEETTITFTLKEFRXXXXXXXXXXXPXQLHFETT 963
            M +    K ++T  ++   +   + I      +F++KEF               ++++  
Sbjct: 193  MGVEKGAKKVKTETTITCEKLTRHKIQIPVEFSFSIKEFLSIVTFADQLGSEVCMYYDLP 252

Query: 964  GRXAVFIVXNGTTLEAHLGLATSKPD 1041
            G+  +  +      +  L LAT   D
Sbjct: 253  GKPLIVSIEAHPNFDIELALATMGSD 278


>AF247970-1|AAF66431.1|  323|Caenorhabditis elegans cell cycle
           checkpoint protein Rad9 protein.
          Length = 323

 Score = 34.7 bits (76), Expect = 0.13
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 457 CKISMKSALNAFKSPAHIDKQVESLEMKLDPESCKLIFCLKCKHG 591
           C++SMKSA   FK  A  +K     E ++DP++ +++  L+  +G
Sbjct: 74  CRLSMKSAQRIFKGVAFGEKNFVGCEFRIDPKAERMMVKLQMNYG 118


>Z92829-13|CAB07344.2|  337|Caenorhabditis elegans Hypothetical
           protein F10A3.6 protein.
          Length = 337

 Score = 29.1 bits (62), Expect = 6.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 288 GMYCXCFNIRPRNVTLHCY 232
           G+YC C+NI  + +T+H Y
Sbjct: 94  GLYCSCYNIMLQLITIHFY 112


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,088,134
Number of Sequences: 27780
Number of extensions: 364815
Number of successful extensions: 727
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3234681980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)