Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_L14
(1248 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.083
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.33
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.44
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.77
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.1
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 7.2
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 33.1 bits (72), Expect = 0.083
Identities = 17/47 (36%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Frame = +2
Query: 854 PPPQGWAXXXKP-PXXXEPPXPXPGTXPPXXPXPXXXXXXPPTRPXP 991
PPP P P PP P G PP P P PP P P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 24.6 bits (51), Expect(2) = 1.8
Identities = 12/33 (36%), Positives = 12/33 (36%)
Frame = +2
Query: 854 PPPQGWAXXXKPPXXXEPPXPXPGTXPPXXPXP 952
PPP G A PP PP G P P
Sbjct: 765 PPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 22.2 bits (45), Expect(2) = 1.8
Identities = 9/27 (33%), Positives = 11/27 (40%)
Frame = +2
Query: 710 VSPXKLPXALSCXHPATXPGXPPXXPP 790
+ P P + PA G PP PP
Sbjct: 740 IVPTPAPAPIPVPPPAPIMGGPPPPPP 766
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.33
Identities = 24/86 (27%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Frame = +2
Query: 707 GVSPXKLPXALSCXHPATXPGXPPXXPPXGKRGXL---HXTHPVXNSXGGXXP-PPQGWA 874
G P P + PA G PP P + PV G P PP A
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTA 1216
Query: 875 XXXKPPXXXEPPXPXPGTXPPXXPXP 952
P PP P P P P P
Sbjct: 1217 PPVPTPSAGLPPVPVPTAKAPPVPAP 1242
Score = 28.3 bits (60), Expect = 2.4
Identities = 20/68 (29%), Positives = 21/68 (30%), Gaps = 1/68 (1%)
Frame = +2
Query: 773 PPXXPPXGKRGXLHXTHPVXNSXGGXXPPPQGWAXXXK-PPXXXEPPXPXPGTXPPXXPX 949
P PP K PV G P P+ A PP PP P P P P
Sbjct: 1155 PSGAPPVPKPSV--AAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Query: 950 PXXXXXXP 973
P P
Sbjct: 1213 PSTAPPVP 1220
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/85 (24%), Positives = 24/85 (28%), Gaps = 3/85 (3%)
Frame = +2
Query: 707 GVSPXKLPXALSCXHPATXPGXPPXXPPXGKRGXLHXT---HPVXNSXGGXXPPPQGWAX 877
G+ P P + P PP P G + PV G P A
Sbjct: 1090 GIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAA 1149
Query: 878 XXKPPXXXEPPXPXPGTXPPXXPXP 952
P PP P P P P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAP 1174
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.7 bits (66), Expect = 0.44
Identities = 18/66 (27%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Frame = +3
Query: 750 TXPPXPXTRPXXLPXGSXX--PFTXXTRXVTPXGGXXPPPKAGRXXXNPPXXPNRPXXXP 923
T P P + P LP + P P PP PP P P P
Sbjct: 419 TPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPP 478
Query: 924 XPIPXP 941
P P P
Sbjct: 479 APAPAP 484
Score = 27.5 bits (58), Expect = 4.1
Identities = 26/100 (26%), Positives = 32/100 (32%), Gaps = 10/100 (10%)
Frame = +2
Query: 716 PXKLPXALSCXHPATXPGXPPXXPPXGKRGXLHXTHPVXNSXGGXXPPP-----QGWAXX 880
P + A S P PP PP P+ +S PP G +
Sbjct: 342 PPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401
Query: 881 XKPP-----XXXEPPXPXPGTXPPXXPXPXXXXXXPPTRP 985
PP PP P P + PP P P PP+ P
Sbjct: 402 ALPPLGNASRTSTPPVPTPPSLPPSAP-PSLPPSAPPSLP 440
Score = 27.1 bits (57), Expect = 5.4
Identities = 23/93 (24%), Positives = 27/93 (29%)
Frame = +2
Query: 707 GVSPXKLPXALSCXHPATXPGXPPXXPPXGKRGXLHXTHPVXNSXGGXXPPPQGWAXXXK 886
G S LP + +T P P P L + P G PP +
Sbjct: 397 GRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIA 456
Query: 887 PPXXXEPPXPXPGTXPPXXPXPXXXXXXPPTRP 985
PP P P PP P P P P
Sbjct: 457 PPLPAGMPAAPP--LPPAAPAPPPAPAPAPAAP 487
Score = 26.6 bits (56), Expect = 7.2
Identities = 21/79 (26%), Positives = 25/79 (31%)
Frame = +3
Query: 756 PPXPXTRPXXLPXGSXXPFTXXTRXVTPXGGXXPPPKAGRXXXNPPXXPNRPXXXPXPIP 935
PP P + P G P +R V+ PP GR P N P+P
Sbjct: 363 PPPPRSAPST---GRQPPPLSSSRAVSNPPAP-PPAIPGRSAPALPPLGNASRTSTPPVP 418
Query: 936 XPPQXRXXXXXXPPPGXXP 992
PP PP P
Sbjct: 419 TPPSLPPSAPPSLPPSAPP 437
Score = 26.2 bits (55), Expect = 9.5
Identities = 18/65 (27%), Positives = 19/65 (29%), Gaps = 2/65 (3%)
Frame = +3
Query: 756 PPXPXTRPXXLPXGSXXPFTXXTRXVTPXGGXXPPPKAGRXXXNPPXXPNRPXXXPXP-- 929
PP P P LP + P G PP PP P P P
Sbjct: 415 PPVPT--PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPA 472
Query: 930 IPXPP 944
P PP
Sbjct: 473 APAPP 477
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.77
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 887 PPXXXEPPXPXPGTXPPXXPXP 952
PP PP P PG PP P P
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPP 26
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 4.1
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Frame = +2
Query: 857 PPQGWAXXXKPPXXXEPPXPXPG---TXPPXXPXPXXXXXXPPTRPXP 991
PPQ A PP PP P PP P P P+ P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/52 (26%), Positives = 16/52 (30%)
Frame = +3
Query: 756 PPXPXTRPXXLPXGSXXPFTXXTRXVTPXGGXXPPPKAGRXXXNPPXXPNRP 911
P P + P P + P P PPP A PP P P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Frame = -2
Query: 512 PPLGXXIPXAAXGRPSAPXQXP---XXXGGRPIXKPPXPAAXGRXXHXGXTSHP 360
PP+ +P + RP P P + +PP + GR TS P
Sbjct: 1055 PPVSSRLPPVSATRPQIPQPPPVSTALPSSSAVSRPPIATSAGRSSTAASTSAP 1108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,860,225
Number of Sequences: 5004
Number of extensions: 21934
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 679334062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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