Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L14
         (1248 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   1.1  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.6 bits (51), Expect(2) = 1.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 888 PPXXPNRPXXXPXPIPXPP 944
           P   PN P   P P P PP
Sbjct: 570 PAGFPNLPNAQPPPAPPPP 588



 Score = 23.4 bits (48), Expect(2) = 2.3
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 842 GGXXPPPQGWAXXXKPPXXXEPP 910
           G   PPP G A    PP    PP
Sbjct: 529 GPPPPPPPGGAVLNIPPQFLPPP 551



 Score = 20.6 bits (41), Expect(2) = 1.1
 Identities = 8/19 (42%), Positives = 8/19 (42%)
 Frame = +3

Query: 837 PXGGXXPPPKAGRXXXNPP 893
           P G   PPP  G     PP
Sbjct: 527 PLGPPPPPPPGGAVLNIPP 545



 Score = 20.6 bits (41), Expect(2) = 2.3
 Identities = 8/22 (36%), Positives = 8/22 (36%)
 Frame = +2

Query: 908 PXPXPGTXPPXXPXPXXXXXXP 973
           P P P   PP  P P      P
Sbjct: 581 PPPAPPPPPPMGPPPSPLAGGP 602


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,867
Number of Sequences: 2352
Number of extensions: 7322
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 66
effective length of database: 408,747
effective search space used: 142652703
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)