Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L13
         (1199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    27   6.8  
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta...    26   9.0  

>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 20  NSXDPHRXXLNIRVNVVATHDXFTSLLSLTNSIGIC 127
           NS        N R+  VATH    +LL  T+S G+C
Sbjct: 137 NSVQTLNNGSNSRILTVATHYSSPNLLGYTSSDGLC 172


>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
           Taf4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 151 RNVNSLRPTNSDGVCERQKRSKTIMCGNHIDAYIQXXSMGIXRI 20
           ++ NSL+P++ DGV   Q+  K I+      A ++    G  RI
Sbjct: 305 KDSNSLKPSSRDGVLPLQQEEKGIITIRDALAVLEMDREGAGRI 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,215,203
Number of Sequences: 5004
Number of extensions: 57114
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 647459150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)