Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_L12
(1237 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0516 + 23593088-23593116,23593209-23593336,23593527-235937... 33 0.61
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 30 3.3
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 29 5.7
10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266 29 7.5
02_01_0475 + 3422629-3422695,3422960-3423216 29 7.5
02_04_0103 - 19768288-19768737 29 10.0
>02_04_0516 +
23593088-23593116,23593209-23593336,23593527-23593714,
23593861-23593919,23594997-23595345,23596081-23596333,
23596404-23597476
Length = 692
Score = 32.7 bits (71), Expect = 0.61
Identities = 18/37 (48%), Positives = 18/37 (48%)
Frame = -3
Query: 161 KKKKKKXKXXKXXXKTKXKXXKXXXKXNKGXXKXKKK 51
KKKKKK K K K K K K K K K KKK
Sbjct: 69 KKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKK 105
Score = 32.7 bits (71), Expect = 0.61
Identities = 18/37 (48%), Positives = 18/37 (48%)
Frame = -3
Query: 161 KKKKKKXKXXKXXXKTKXKXXKXXXKXNKGXXKXKKK 51
KKKKKK K K K K K K K K K KKK
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 31.5 bits (68), Expect = 1.4
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = -3
Query: 161 KKKKKKXKXXKXXXKTKXKXXKXXXKXNKGXXKXKKK 51
KKKKKK K K K K K K K K K KK+
Sbjct: 72 KKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKR 108
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = -1
Query: 160 KKKKKKXKXXKXXXKPKXXKXXKXXKXTRXXLKXKKK 50
KKKKKK K K K K K K K + K KKK
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKK 104
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = -1
Query: 160 KKKKKKXKXXKXXXKPKXXKXXKXXKXTRXXLKXKKK 50
KKKKKK K K K K K K K + K KKK
Sbjct: 69 KKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKK 105
Score = 31.1 bits (67), Expect = 1.9
Identities = 17/37 (45%), Positives = 18/37 (48%)
Frame = -1
Query: 160 KKKKKKXKXXKXXXKPKXXKXXKXXKXTRXXLKXKKK 50
KKKKKK K K K K K K K + K KKK
Sbjct: 71 KKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKK 107
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = -3
Query: 161 KKKKKKXKXXKXXXKTKXKXXKXXXKXNKGXXKXKKK 51
KKKKKK K K K K K K K K KKK
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKK 104
Score = 30.7 bits (66), Expect = 2.5
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = -3
Query: 161 KKKKKKXKXXKXXXKTKXKXXKXXXKXNKGXXKXKKK 51
KKKKKK K K K K K K K K KKK
Sbjct: 71 KKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKK 107
Score = 30.3 bits (65), Expect = 3.3
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -1
Query: 160 KKKKKKXKXXKXXXKPKXXKXXKXXKXTRXXLKXKKKLXXP 38
KKKKKK K K K K K K + K KKK P
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKRWP 110
Score = 29.9 bits (64), Expect = 4.3
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = -3
Query: 167 PXKKKKKKXKXXKXXXKTKXKXXKXXXKXNKGXXKXKKK 51
P KKKK K K K K K K K K K KKK
Sbjct: 64 PVVMKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKK 102
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +1
Query: 1045 KXXXXKKKXXXKKKKKKXXXXXXXXKKKGGXXXKKKK 1155
K KKK KKKKKK KKK KKKK
Sbjct: 68 KKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKK 104
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +1
Query: 1045 KXXXXKKKXXXKKKKKKXXXXXXXXKKKGGXXXKKKK 1155
K KKK KKKKKK KKK KKKK
Sbjct: 69 KKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKK 105
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +1
Query: 1045 KXXXXKKKXXXKKKKKKXXXXXXXXKKKGGXXXKKKK 1155
K KKK KKKKKK KKK KKKK
Sbjct: 70 KKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKK 106
Score = 29.5 bits (63), Expect = 5.7
Identities = 17/37 (45%), Positives = 17/37 (45%)
Frame = +1
Query: 1045 KXXXXKKKXXXKKKKKKXXXXXXXXKKKGGXXXKKKK 1155
K KKK KKKKKK KKK KKKK
Sbjct: 71 KKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKK 107
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 30.3 bits (65), Expect = 3.3
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 96 FXXFXFGFXXXFXXFXFFFFFFXG 167
F F F F F F FFFFFF G
Sbjct: 87 FFFFFFFFFFFFFFFFFFFFFFSG 110
Score = 29.9 bits (64), Expect = 4.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +2
Query: 92 FXXFXXFWFXXXFXXFXFFFFFFXXG 169
+ F F+F F F FFFFFF G
Sbjct: 85 YAFFFFFFFFFFFFFFFFFFFFFFSG 110
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 29.5 bits (63), Expect = 5.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 92 FXXFXXFWFXXXFXXFXFFFFFF 160
F F F+F F F FFFFFF
Sbjct: 62 FFFFFFFFFFFFFFFFFFFFFFF 84
Score = 29.5 bits (63), Expect = 5.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 92 FXXFXXFWFXXXFXXFXFFFFFF 160
F F F+F F F FFFFFF
Sbjct: 63 FFFFFFFFFFFFFFFFFFFFFFF 85
Score = 29.5 bits (63), Expect = 5.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 92 FXXFXXFWFXXXFXXFXFFFFFF 160
F F F+F F F FFFFFF
Sbjct: 64 FFFFFFFFFFFFFFFFFFFFFFF 86
Score = 28.7 bits (61), Expect = 10.0
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 83 FXXFXXFXXFWFXXXFXXFXFFFFF 157
F F F F+F F F FFFFF
Sbjct: 62 FFFFFFFFFFFFFFFFFFFFFFFFF 86
>10_08_0966 + 21921343-21921354,21923196-21923264,21924165-21924266
Length = 60
Score = 29.1 bits (62), Expect = 7.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 168 PXKKKKKKKXKXKXXXXNQXQXKXXKXKK 82
P KKKKKKK K K + + K K KK
Sbjct: 27 PKKKKKKKKKKKKKKKKKKKKKKKKKKKK 55
>02_01_0475 + 3422629-3422695,3422960-3423216
Length = 107
Score = 29.1 bits (62), Expect = 7.5
Identities = 15/29 (51%), Positives = 15/29 (51%)
Frame = -3
Query: 161 KKKKKKXKXXKXXXKTKXKXXKXXXKXNK 75
KKKKKK K K K K K K K NK
Sbjct: 45 KKKKKKKKKKKKKKKKKKKKKKKKKKKNK 73
>02_04_0103 - 19768288-19768737
Length = 149
Score = 28.7 bits (61), Expect = 10.0
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +1
Query: 1006 GGXXFXXGXXXXGKXXXXKKKXXXKKKKKKXXXXXXXXKKKGGXXXKKK 1152
GG + G + K+K KKKKKK KKK KKK
Sbjct: 91 GGRGWIDGPMREKRRRKRKRKRKKKKKKKKKKKKKKKKKKKKKKKKKKK 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,954,823
Number of Sequences: 37544
Number of extensions: 166489
Number of successful extensions: 1118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3806166204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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