Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_L11
(1234 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O43809 Cluster: Cleavage and polyadenylation specificit... 373 e-102
UniRef50_Q259F9 Cluster: H0124B04.17 protein; n=14; Eukaryota|Re... 244 4e-63
UniRef50_Q4WE76 Cluster: Cleavage and polyadenylation specific f... 225 2e-57
UniRef50_O65606 Cluster: Putative uncharacterized protein M7J2.8... 206 1e-51
UniRef50_Q6C1Q0 Cluster: Similar to wi|NCU09014.1 Neurospora cra... 197 4e-49
UniRef50_A7PE32 Cluster: Chromosome chr11 scaffold_13, whole gen... 191 3e-47
UniRef50_Q012R9 Cluster: MRNA cleavage factor I subunit; n=2; Os... 188 3e-46
UniRef50_Q94AF0 Cluster: AT4g29820/F27B13_60; n=3; Magnoliophyta... 184 4e-45
UniRef50_Q5KEC3 Cluster: Putative uncharacterized protein; n=1; ... 138 2e-31
UniRef50_Q4PBX0 Cluster: Putative uncharacterized protein; n=2; ... 133 8e-30
UniRef50_Q9SZQ4 Cluster: MRNA cleavage factor subunit-like prote... 122 1e-26
UniRef50_A2DA19 Cluster: Hydrolase, NUDIX family protein; n=1; T... 109 2e-22
UniRef50_Q7YZC1 Cluster: Pre-mRNA cleavage factor I 25 kDa subun... 96 2e-18
UniRef50_Q6BCA7 Cluster: Cleavage factor I 25 kDa; n=5; Trypanos... 89 2e-16
UniRef50_A5K9S5 Cluster: mRNA cleavage factor-like protein, puta... 89 2e-16
UniRef50_Q4N1V1 Cluster: MRNA cleavage factor protein, putative;... 79 2e-13
UniRef50_A4HEN7 Cluster: Putative uncharacterized protein; n=1; ... 78 4e-13
UniRef50_Q3LVX2 Cluster: Pre-mRNA cleavage factor I; n=1; Bigelo... 74 9e-12
UniRef50_Q5CWT4 Cluster: NUDIX domain protein; mRNA cleavage fac... 69 2e-10
UniRef50_A7ANZ8 Cluster: Putative uncharacterized protein; n=1; ... 69 3e-10
UniRef50_Q9FCX1 Cluster: YcfB protein; n=1; Erwinia amylovora|Re... 38 0.53
UniRef50_Q2V2W0 Cluster: Uncharacterized protein At5g63600.2; n=... 37 0.93
UniRef50_Q9A517 Cluster: MutT/nudix family protein; n=1; Cauloba... 36 1.6
UniRef50_Q9A8K7 Cluster: MutT/nudix family protein; n=2; Cauloba... 36 2.1
UniRef50_Q88FW1 Cluster: MutT/nudix family protein; n=1; Pseudom... 36 2.8
UniRef50_A1K3E0 Cluster: Bifunctional DGTP-pyrophosphohydrolase/... 36 2.8
UniRef50_A6VQQ8 Cluster: TRAP transporter, 4TM/12TM fusion prote... 35 3.7
UniRef50_UPI0000E87B8A Cluster: hypothetical protein MB2181_0617... 35 5.0
UniRef50_A7BA88 Cluster: Putative uncharacterized protein; n=1; ... 34 6.5
UniRef50_A5D2M6 Cluster: NTP pyrophosphohydrolases; n=1; Pelotom... 34 6.5
UniRef50_Q1DZ53 Cluster: Predicted protein; n=1; Coccidioides im... 34 6.5
>UniRef50_O43809 Cluster: Cleavage and polyadenylation specificity
factor subunit 5; n=34; Bilateria|Rep: Cleavage and
polyadenylation specificity factor subunit 5 - Homo
sapiens (Human)
Length = 227
Score = 373 bits (917), Expect = e-102
Identities = 169/196 (86%), Positives = 183/196 (93%)
Frame = +1
Query: 244 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 423
LTL R+INLYPLTNYTFGTKEPL+EKD+SV ARFQRMREEF KIGMRR+VEGVL+VHEH
Sbjct: 31 LTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEFDKIGMRRTVEGVLIVHEHR 90
Query: 424 LPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWR 603
LPHVLLLQLGT FFKLPGGELNPGEDE++GLKRL+TE LGRQDGV Q+W+I+D IGNWWR
Sbjct: 91 LPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTEILGRQDGVLQDWVIDDCIGNWWR 150
Query: 604 PNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGP 783
PNFEPPQYPYIP HITKPKEHK+LFLVQLQ++ALFAVPKNYKLVAAPLFELYDNA GYGP
Sbjct: 151 PNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGP 210
Query: 784 IISSLSQSLCRFNFIY 831
IISSL Q L RFNFIY
Sbjct: 211 IISSLPQLLSRFNFIY 226
>UniRef50_Q259F9 Cluster: H0124B04.17 protein; n=14; Eukaryota|Rep:
H0124B04.17 protein - Oryza sativa (Rice)
Length = 2505
Score = 244 bits (597), Expect = 4e-63
Identities = 111/189 (58%), Positives = 131/189 (69%), Gaps = 1/189 (0%)
Frame = +1
Query: 262 INLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLL 441
+N+YPL NYTFGTKEP EKD SV R RM+ + K GMR SVE +LLV EH PH+LL
Sbjct: 9 VNVYPLANYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 68
Query: 442 LQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLG-RQDGVKQEWLIEDTIGNWWRPNFEP 618
LQ+G F KLPGG L PGE+EI+GLKR L L W + + + WWRPNFE
Sbjct: 69 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 128
Query: 619 PQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSL 798
YPY PPHITKPKE K+LF+V L +R FAVP+N KL+A PLFELYDN Q YGP+IS++
Sbjct: 129 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTI 188
Query: 799 SQSLCRFNF 825
Q L RF F
Sbjct: 189 PQQLSRFQF 197
>UniRef50_Q4WE76 Cluster: Cleavage and polyadenylation specific
factor 5; n=19; Eukaryota|Rep: Cleavage and
polyadenylation specific factor 5 - Aspergillus
fumigatus (Sartorya fumigata)
Length = 334
Score = 225 bits (549), Expect = 2e-57
Identities = 104/199 (52%), Positives = 141/199 (70%), Gaps = 6/199 (3%)
Frame = +1
Query: 256 RSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHV 435
++I LYPL+NYTFGTKE E+D SV AR +R+ E + K GMRR+ EGVL+ HEH PHV
Sbjct: 83 KTIRLYPLSNYTFGTKETQPEEDPSVLARLKRLEEHYEKHGMRRTCEGVLVCHEHNHPHV 142
Query: 436 LLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL---GRQ---DGVKQEWLIEDTIGNW 597
L+LQ+ AFFKLPG L+ +DE++G K+ L E L G Q +GV ++W I DT+ W
Sbjct: 143 LMLQIANAFFKLPGDYLHFDDDEVEGFKKRLNERLAPVGSQFSGEGVNEDWEIGDTLAQW 202
Query: 598 WRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGY 777
WRPNFE YP++P H+T+PKE K+L+ +QL + + +VPKN KL+A PLFELYDN Y
Sbjct: 203 WRPNFETFMYPFLPGHVTRPKECKKLYFIQLPKKKVLSVPKNMKLLAVPLFELYDNTARY 262
Query: 778 GPIISSLSQSLCRFNFIYM 834
GP +S++ L R+NF ++
Sbjct: 263 GPQLSAIPHLLSRYNFEFV 281
>UniRef50_O65606 Cluster: Putative uncharacterized protein M7J2.80;
n=3; core eudicotyledons|Rep: Putative uncharacterized
protein M7J2.80 - Arabidopsis thaliana (Mouse-ear cress)
Length = 210
Score = 206 bits (502), Expect = 1e-51
Identities = 103/198 (52%), Positives = 126/198 (63%), Gaps = 22/198 (11%)
Frame = +1
Query: 244 LTLNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHG 423
+ +++ +N YPL+NY+FGTKEP EKD SV R RM+ + K GMR SVEG+LLV EH
Sbjct: 1 MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHN 60
Query: 424 LPHVLLLQLGTAFFKLPGGELNPGED---------------EIDGLKRLLTETL-GRQDG 555
PH+LLLQ+G F KLPGG L PGE+ E DGLKR LT L G
Sbjct: 61 HPHILLLQIGNTFCKLPGGRLKPGENGIQLPPFWVYYVVSAEADGLKRKLTSKLGGNSAA 120
Query: 556 VKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPK------EHKRLFLVQLQDRALFAVP 717
+ +W + + + WWRPNFE YPY PPHITKPK E KRL++V L ++ FAVP
Sbjct: 121 LVPDWTVGECVATWWRPNFETMMYPYCPPHITKPKVVKKHNECKRLYIVHLSEKEYFAVP 180
Query: 718 KNYKLVAAPLFELYDNAQ 771
KN KL+A PLFELYDN Q
Sbjct: 181 KNLKLLAVPLFELYDNVQ 198
>UniRef50_Q6C1Q0 Cluster: Similar to wi|NCU09014.1 Neurospora crassa
NCU09014. 1 hypothetical protein; n=1; Yarrowia
lipolytica|Rep: Similar to wi|NCU09014.1 Neurospora
crassa NCU09014. 1 hypothetical protein - Yarrowia
lipolytica (Candida lipolytica)
Length = 262
Score = 197 bits (481), Expect = 4e-49
Identities = 96/195 (49%), Positives = 124/195 (63%), Gaps = 5/195 (2%)
Frame = +1
Query: 256 RSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHV 435
++I LYP +NY F TK+ E+D SV AR QR++ + + GM R VEGV L HE G P+V
Sbjct: 26 QTIRLYPSSNYVFATKDAQVERDVSVQARMQRLKSMYDESGMLRYVEGVFLCHEFGTPYV 85
Query: 436 LLLQLGTAFFKLPGGELNPGE-DEIDGLKRLLTETLGRQDGVKQE----WLIEDTIGNWW 600
LLQL FFKLPG L+P E DE GL R L + L ++G QE W + D + WW
Sbjct: 86 FLLQLPNNFFKLPGEYLDPDEEDEEGGLLRKLADRLSPENGEDQENSKSWKVLDCLAQWW 145
Query: 601 RPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYG 780
RPNFE YP++PPHI++PKE K+ FL+ L ++ F VP N +A PLFELYDN YG
Sbjct: 146 RPNFEVFMYPFLPPHISRPKECKKTFLISLPEKIAFFVPSNMTFLAVPLFELYDNPARYG 205
Query: 781 PIISSLSQSLCRFNF 825
P + +L L R+NF
Sbjct: 206 PQLCALPHYLSRYNF 220
>UniRef50_A7PE32 Cluster: Chromosome chr11 scaffold_13, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr11 scaffold_13, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 291
Score = 191 bits (466), Expect = 3e-47
Identities = 89/192 (46%), Positives = 127/192 (66%), Gaps = 1/192 (0%)
Frame = +1
Query: 253 NRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPH 432
N +++YPL+ Y FG+K+PL K+ ++ R RM+ + + G R V V+LV PH
Sbjct: 95 NHVLDIYPLSCYYFGSKDPLLLKEETLADRILRMKSNYSRYGSRTCVVAVILVELFKHPH 154
Query: 433 VLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLG-RQDGVKQEWLIEDTIGNWWRPN 609
+LLLQ+ +FFKLPGG L PGE EI+GLKR L+ L +DG +W + + +G WWRP+
Sbjct: 155 LLLLQVKNSFFKLPGGRLRPGESEINGLKRKLSRKLSVNEDGDGSDWEVGECLGMWWRPD 214
Query: 610 FEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPII 789
FE YPY+PP++ PKE +LFLV+L F VPKN KL+A PL +L++N + YGPII
Sbjct: 215 FETLLYPYLPPNVKNPKECTKLFLVKLPPSRKFIVPKNLKLLAIPLCQLHENDKTYGPII 274
Query: 790 SSLSQSLCRFNF 825
+ + Q L +F+F
Sbjct: 275 AGVPQLLSKFSF 286
>UniRef50_Q012R9 Cluster: MRNA cleavage factor I subunit; n=2;
Ostreococcus|Rep: MRNA cleavage factor I subunit -
Ostreococcus tauri
Length = 279
Score = 188 bits (458), Expect = 3e-46
Identities = 91/191 (47%), Positives = 125/191 (65%), Gaps = 3/191 (1%)
Frame = +1
Query: 256 RSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHV 435
R ++++ L NYTFGTK EKD+S AR RM+ ++ + G RRSV + +V +H PH+
Sbjct: 84 RVVDVHALGNYTFGTKRARGEKDSSAAARLLRMKTQYEREGKRRSVGAICMVSQHRTPHI 143
Query: 436 LLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLG--RQDGV-KQEWLIEDTIGNWWRP 606
LLLQ+ FKLPGG L GE E +GL R + L R+DG+ E+ + D + W+R
Sbjct: 144 LLLQITPTTFKLPGGRLRAGEGEREGLARKMQNKLQPEREDGLGAYEFDVGDQVATWYRT 203
Query: 607 NFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPI 786
+FEP YPY+P HITKPKE ++F+V L ++A FAVPKN KL+A PLFELY N + YG
Sbjct: 204 SFEPQMYPYLPAHITKPKEEHKIFIVHLPEKAAFAVPKNLKLLAVPLFELYGNPEKYGSE 263
Query: 787 ISSLSQSLCRF 819
I+S+ L R+
Sbjct: 264 IASIPHLLSRY 274
>UniRef50_Q94AF0 Cluster: AT4g29820/F27B13_60; n=3;
Magnoliophyta|Rep: AT4g29820/F27B13_60 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 222
Score = 184 bits (448), Expect = 4e-45
Identities = 90/192 (46%), Positives = 123/192 (64%), Gaps = 1/192 (0%)
Frame = +1
Query: 262 INLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLL 441
++LYPL++Y FG+KE L KD + R R++ + G+R VE VLLV PHVLL
Sbjct: 29 VDLYPLSSYYFGSKEALRVKDEIISDRVIRLKSNYAAHGLRTCVEAVLLVELFKHPHVLL 88
Query: 442 LQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQE-WLIEDTIGNWWRPNFEP 618
LQ + FKLPGG L PGE +I+GLKR L L + V + + + IG WWRPNFE
Sbjct: 89 LQYRNSIFKLPGGRLRPGESDIEGLKRKLASKLSVNENVGVSGYEVGECIGMWWRPNFET 148
Query: 619 PQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSL 798
YP++PP+I PKE +LFLV+L F VPKN+KL+A PL +L++N + YGPI+S +
Sbjct: 149 LMYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQI 208
Query: 799 SQSLCRFNFIYM 834
+ L +F+F M
Sbjct: 209 PKLLSKFSFNMM 220
>UniRef50_Q5KEC3 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 229
Score = 138 bits (335), Expect = 2e-31
Identities = 82/222 (36%), Positives = 118/222 (53%), Gaps = 36/222 (16%)
Frame = +1
Query: 259 SINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLV--------- 411
+I +PL NY F +E E+D SV R +R+ +++ + G RRSVE +++V
Sbjct: 8 TIEAFPLRNYLFIEREGQPEEDNSVTNRLKRLEDQYKESGTRRSVEAIMVVTVGNSISPS 67
Query: 412 --------HEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLG-------- 543
HG HVL+LQ+ AF+KLPGG L+P E + +GL L E LG
Sbjct: 68 RALLNLPVQVHGFAHVLVLQVANAFYKLPGGYLDPSESDAEGLITRLNEQLGVPVTTLKG 127
Query: 544 -RQDGVK----------QEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQL 690
+D + ++W + D + W+RP+F+ YPY P H++ PKE K+L+LV L
Sbjct: 128 KDEDDLPRTVWLAPEGGRDWEVRDCLSVWYRPHFDTFLYPYAPAHVSYPKECKKLYLVNL 187
Query: 691 QDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCR 816
FAVP N KL A P+FE YDNA YGP + + L +
Sbjct: 188 PPNKTFAVPANMKLHAIPIFEFYDNAARYGPQFAGIPYILSK 229
>UniRef50_Q4PBX0 Cluster: Putative uncharacterized protein; n=2;
Ustilago|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 258
Score = 133 bits (322), Expect = 8e-30
Identities = 65/136 (47%), Positives = 90/136 (66%), Gaps = 14/136 (10%)
Frame = +1
Query: 250 LNRSINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLP 429
+++++ LYP+T +TF TK+ E+D SV AR QR++ + +GMRR+VE VL+VHEHG P
Sbjct: 1 MSQTLTLYPVTAFTFTTKDAQPEEDPSVAARLQRLQNNYEDLGMRRTVEAVLVVHEHGHP 60
Query: 430 HVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLG-----------RQDGVKQ---E 567
HVL+LQ+ AFFKLPG L PGEDE++G+K L E LG +G + +
Sbjct: 61 HVLMLQIANAFFKLPGDYLKPGEDEVEGIKARLDERLGPVESDPNSFGPNGEGRNKDDGD 120
Query: 568 WLIEDTIGNWWRPNFE 615
W I+D + WWRPNFE
Sbjct: 121 WEIQDCLAQWWRPNFE 136
Score = 62.5 bits (145), Expect = 2e-08
Identities = 27/48 (56%), Positives = 36/48 (75%)
Frame = +1
Query: 688 LQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFIY 831
L+ + AVPKN KL+A PLFELYDN+Q YGP ++++ L R+NFIY
Sbjct: 209 LRHAEVLAVPKNMKLLAVPLFELYDNSQRYGPQLAAIPHLLSRYNFIY 256
>UniRef50_Q9SZQ4 Cluster: MRNA cleavage factor subunit-like protein;
n=1; Arabidopsis thaliana|Rep: MRNA cleavage factor
subunit-like protein - Arabidopsis thaliana (Mouse-ear
cress)
Length = 185
Score = 122 bits (295), Expect = 1e-26
Identities = 77/191 (40%), Positives = 106/191 (55%)
Frame = +1
Query: 262 INLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLL 441
++LYPL++Y FG+KE L R+++E ++ H PHVLL
Sbjct: 29 VDLYPLSSYYFGSKEAL------------RVKDE-------------IISDRH--PHVLL 61
Query: 442 LQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNFEPP 621
LQ + FKLPGG L PGE GL +L V + IG WWRPNFE
Sbjct: 62 LQYRNSIFKLPGGRLRPGES---GLVCCFLASLCINIAVGE------CIGMWWRPNFETL 112
Query: 622 QYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSLS 801
YP++PP+I PKE +LFLV+L F VPKN+KL+A PL +L++N + YGPI+S +
Sbjct: 113 MYPFLPPNIKHPKECTKLFLVRLPVHQQFVVPKNFKLLAVPLCQLHENEKTYGPIMSQIP 172
Query: 802 QSLCRFNFIYM 834
+ L +F+F M
Sbjct: 173 KLLSKFSFNMM 183
>UniRef50_A2DA19 Cluster: Hydrolase, NUDIX family protein; n=1;
Trichomonas vaginalis G3|Rep: Hydrolase, NUDIX family
protein - Trichomonas vaginalis G3
Length = 191
Score = 109 bits (261), Expect = 2e-22
Identities = 55/192 (28%), Positives = 106/192 (55%), Gaps = 1/192 (0%)
Frame = +1
Query: 259 SINLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVL 438
S+ ++ L+NY FG E E++ + R ++++E F G +SV ++L HEH + +L
Sbjct: 2 SLRIHKLSNYRFGASEDEEEEEKAHTDRMEKIKEIFAVEGTVKSVRCIILAHEHNITTIL 61
Query: 439 LLQ-LGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWWRPNFE 615
LL+ ++PGG + GE++ +KR+LT+ +G E+ I D + W+RP F
Sbjct: 62 LLKNKNKKKLQMPGGIVRTGEEDEAAIKRILTKKFRIVEG---EFDIGDHVATWYRPQFS 118
Query: 616 PPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISS 795
YPY+P HIT+ KE ++ ++V L ++A F + +L A ++++N + +
Sbjct: 119 EYLYPYLPAHITQAKEIEKWYIVMLPEKAHFNIQSKNELSALQFIQIHNNVEYQEKTLLY 178
Query: 796 LSQSLCRFNFIY 831
+ + +++F +
Sbjct: 179 IPAIMSKYDFTF 190
>UniRef50_Q7YZC1 Cluster: Pre-mRNA cleavage factor I 25 kDa subunit;
n=3; Entamoeba histolytica|Rep: Pre-mRNA cleavage factor
I 25 kDa subunit - Entamoeba histolytica
Length = 236
Score = 95.9 bits (228), Expect = 2e-18
Identities = 60/198 (30%), Positives = 106/198 (53%), Gaps = 8/198 (4%)
Frame = +1
Query: 262 INLYPLTNYTFGTKEPLFE-KDASVPARFQRMREEFCKIGM-RRSVEGVLLVHEHGLPHV 435
+ +YP+ NY KE L + K + + +++ K + R SV GV+LVH++ PH+
Sbjct: 40 LKIYPIENYQIDKKEKLDKLKHQTFGYQMDQLKISVEKNHVPRTSVYGVILVHKNNFPHL 99
Query: 436 LLLQLGTAF-----FKLPGGELNPGEDE-IDGLKRLLTETLGRQDGVKQEWLIEDTIGNW 597
L+LQ + L GG L GED+ ++GLKR L + + + E I + +G +
Sbjct: 100 LVLQSNLSMDLKDEIHLVGGRLKIGEDDPVEGLKRKLRKKMSMEYITHYE--IGELLGTF 157
Query: 598 WRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGY 777
+R ++ YPYIP H+++ KE ++++ L ++ F + KL + PLF L++N + Y
Sbjct: 158 YRIEYDKNLYPYIPVHVSQVKEIINIYMIHLVEKCDFKIFDTDKLSSIPLFALHNNFEKY 217
Query: 778 GPIISSLSQSLCRFNFIY 831
+ S+ + R+ IY
Sbjct: 218 NITLCSIPTLVSRYLMIY 235
>UniRef50_Q6BCA7 Cluster: Cleavage factor I 25 kDa; n=5;
Trypanosomatidae|Rep: Cleavage factor I 25 kDa -
Trypanosoma cruzi
Length = 292
Score = 89.0 bits (211), Expect = 2e-16
Identities = 81/227 (35%), Positives = 110/227 (48%), Gaps = 50/227 (22%)
Frame = +1
Query: 301 KEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHV-LLLQLGT------- 456
K PL EK S+ AR REE C SVEGVLLVH H PHV LL T
Sbjct: 72 KTPL-EKLMSLKAR---CREEQCV----HSVEGVLLVHVHDHPHVLLLRHANTKASAHSR 123
Query: 457 ----------AFFKLPGGELNPGE-DEIDGLKRLLTETLGRQDGV---------KQEWLI 576
A F LPGG GE +EI L++L + L + + E ++
Sbjct: 124 VLPATNTNNLAVFSLPGGRCRKGEPEEICLLRKLGRDLLNEKKSLMASRTAESESSEMVV 183
Query: 577 E-------------------DTIGNWWRPNFEPPQYPYIPPHITKP--KEHKRLFLVQLQ 693
E + +G W+RP+F+P YPY+P H+ + KE + +FLV L
Sbjct: 184 EVGASHSLAVAPSSSSFRVGEALGRWYRPHFDPFMYPYVPAHVAESDVKEVRTVFLVHLP 243
Query: 694 DRALFAVP-KNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFIY 831
+ L V ++ +LVAAPLF+LY+N+ YGP+I+S+ L R N Y
Sbjct: 244 PQMLLTVAQRDVELVAAPLFDLYENSAKYGPLIASIPTLLSRVNINY 290
>UniRef50_A5K9S5 Cluster: mRNA cleavage factor-like protein,
putative; n=12; root|Rep: mRNA cleavage factor-like
protein, putative - Plasmodium vivax
Length = 267
Score = 89.0 bits (211), Expect = 2e-16
Identities = 58/194 (29%), Positives = 91/194 (46%), Gaps = 15/194 (7%)
Frame = +1
Query: 268 LYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQ 447
+YP NY F E L K + ++ + + G+R S ++L H + PH+LLLQ
Sbjct: 59 VYPQANYEFNIDEKLKSKFVMDADKCKKRINTYNQNGIRSSALAIILCHRYEYPHLLLLQ 118
Query: 448 -LGTAFFKLPGGELNPGEDEIDGLKRLLTETLGR--------------QDGVKQEWLIED 582
+ + + L G+ E D LK+ L + + + Q + I +
Sbjct: 119 NVESQTYYLLSGKYRSWEKPRDVLKKKLQKYVNQIRDMHFATSHFNAEQKESEDPIEIGE 178
Query: 583 TIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYD 762
+G WW+ F PY+P HIT+PKE+ RL+ V L R +F +P + L A PLF+L
Sbjct: 179 FLGEWWKTQFNSVYLPYLPAHITRPKEYIRLYQVTLTSRCIFHLPPGFTLKALPLFDLGS 238
Query: 763 NAQGYGPIISSLSQ 804
G + S LS+
Sbjct: 239 CGVAIGGLTSVLSR 252
>UniRef50_Q4N1V1 Cluster: MRNA cleavage factor protein, putative;
n=2; Theileria|Rep: MRNA cleavage factor protein,
putative - Theileria parva
Length = 226
Score = 79.0 bits (186), Expect = 2e-13
Identities = 56/162 (34%), Positives = 82/162 (50%), Gaps = 9/162 (5%)
Frame = +1
Query: 376 GMRRSVEGVLLVHEHGLPHVLLLQLGT-AFFKLPGGEL----NPGEDEIDGLKRLLTETL 540
GMR +V GV+L H G P VLLL+ L GG+ NP E L R +T T
Sbjct: 64 GMRITVCGVILSHRKGFPFVLLLKRDLDKSVGLLGGKCKSFENPKEVLSSKLARFITSTK 123
Query: 541 GR-QDGVKQ--EWL-IEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALF 708
+ Q +K+ E + + + + ++WR +F PY+P H +PKE L+ V LQ+
Sbjct: 124 HKHQLNIKETIETIQVGELLADFWRCDFNTEPLPYLPLHTNRPKEKISLYQVVLQESCKI 183
Query: 709 AVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFIYM 834
+VPK Y L PL++ Y+ +G + SL L RF Y+
Sbjct: 184 SVPKGYSLKFVPLYDFYN--PEFGLSLGSLPHLLSRFKISYL 223
>UniRef50_A4HEN7 Cluster: Putative uncharacterized protein; n=1;
Leishmania braziliensis|Rep: Putative uncharacterized
protein - Leishmania braziliensis
Length = 271
Score = 78.2 bits (184), Expect = 4e-13
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Frame = +1
Query: 574 IEDTIGNWWRPNFEPPQYPYIPPHI--TKPKEHKRLFLVQLQDRALF-AVPKNYKLVAAP 744
I + + W+RP+F P YPY+P HI + +E + ++LV L+ F V + +LVAAP
Sbjct: 178 IGEVLSTWYRPHFTPHMYPYVPAHIAASSVREVRTVYLVHLEPTVYFNLVQEGVELVAAP 237
Query: 745 LFELYDNAQGYGPIISSLSQSLCR 816
LF+LY+N+ YGPIISSL L R
Sbjct: 238 LFDLYENSSKYGPIISSLPVLLSR 261
Score = 35.5 bits (78), Expect = 2.8
Identities = 19/34 (55%), Positives = 22/34 (64%)
Frame = +1
Query: 346 QRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQ 447
+R EE C SVEGVLLVH H PHVLL++
Sbjct: 58 KRCEEELCV----HSVEGVLLVHLHRHPHVLLMK 87
>UniRef50_Q3LVX2 Cluster: Pre-mRNA cleavage factor I; n=1;
Bigelowiella natans|Rep: Pre-mRNA cleavage factor I -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 202
Score = 73.7 bits (173), Expect = 9e-12
Identities = 54/190 (28%), Positives = 94/190 (49%), Gaps = 7/190 (3%)
Frame = +1
Query: 271 YPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLLLQL 450
YP+ NY F T + + KD + + QR++ +F K G S + +++V +H P+VLL +
Sbjct: 5 YPIENYKFYTSKAVKRKDRKMRHKLQRLKYKFLKFGSFASRKSIVIVTKHKHPYVLLFRS 64
Query: 451 GTAFFKLPGGELNPGEDEIDGLKRLLTETLGR-QDGVKQEWLIEDTIGNWWRPNFEPPQY 627
F + + + + D LK++ E + + + + + + R FE Y
Sbjct: 65 FNDKFDIIDID-KLLKFKSDHLKKVNLENVNNVSKNLFTKSMNSRLVSIFLRQGFESKLY 123
Query: 628 PYIPPHITKPKEHKRLFLVQLQDRALFAV------PKNYKLVAAPLFELYDNAQGYGPII 789
PY PHI K+ ++L L+ LF V PKN+++ A P FE+Y N YG II
Sbjct: 124 PYCLPHIKYTKQIFFVYLNFLKKNELFQVLLSSKIPKNFEVKAFPFFEIYLN-NYYGAII 182
Query: 790 SSLSQSLCRF 819
+S+ + ++
Sbjct: 183 NSIPTMVSKY 192
>UniRef50_Q5CWT4 Cluster: NUDIX domain protein; mRNA cleavage
factor-like protein Im like, plant+animal group; n=3;
Cryptosporidium|Rep: NUDIX domain protein; mRNA cleavage
factor-like protein Im like, plant+animal group -
Cryptosporidium parvum Iowa II
Length = 277
Score = 69.3 bits (162), Expect = 2e-10
Identities = 32/82 (39%), Positives = 48/82 (58%)
Frame = +1
Query: 574 IEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFE 753
+ + +G WWR F PY+PPH T+PKE R++ V L + LF +PK++ L + PLF+
Sbjct: 188 VGEYLGTWWRTEFNYSPLPYLPPHSTRPKETIRIYQVILPPKLLFKLPKHHVLKSLPLFD 247
Query: 754 LYDNAQGYGPIISSLSQSLCRF 819
L N +G S+ Q + RF
Sbjct: 248 LDPNI--FGIACGSIPQLISRF 267
>UniRef50_A7ANZ8 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 357
Score = 68.5 bits (160), Expect = 3e-10
Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 9/162 (5%)
Frame = +1
Query: 376 GMRRSVEGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGR-QD 552
G+R +V G++L H +G P +L+L+ + L GG+ E+ + LK L + +
Sbjct: 59 GLRITVYGLILCHRNGFPCILVLRDTSGNIGLLGGKCKSFENPREVLKLKLARFVSTSRK 118
Query: 553 GVKQ--------EWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALF 708
GV Q ++ + +G +WR ++ PY+P HI +P+E ++ V L+++ F
Sbjct: 119 GVHQLNVRANVDTIIVGEFMGEFWRAEYDSDVLPYLPLHINRPREKILIYQVTLREQCSF 178
Query: 709 AVPKNYKLVAAPLFELYDNAQGYGPIISSLSQSLCRFNFIYM 834
P + + L E Y Q IS+L L RFN +M
Sbjct: 179 IAPGDMHIEPMALHEFYCAEQSVA--ISALPHLLTRFNLSFM 218
>UniRef50_Q9FCX1 Cluster: YcfB protein; n=1; Erwinia amylovora|Rep:
YcfB protein - Erwinia amylovora (Fire blight bacteria)
Length = 132
Score = 37.9 bits (84), Expect = 0.53
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +1
Query: 403 LLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQ 549
+++H+ L +L + GTA F PGG+ GED + LKR L E LG Q
Sbjct: 10 IIIHQRSL--LLTRKRGTAIFISPGGKPLAGEDHLSCLKRELDEELGVQ 56
>UniRef50_Q2V2W0 Cluster: Uncharacterized protein At5g63600.2; n=5;
Arabidopsis thaliana|Rep: Uncharacterized protein
At5g63600.2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 326
Score = 37.1 bits (82), Expect = 0.93
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Frame = +1
Query: 397 GVLLVHEHGLPHVLLLQL---GTAFFKLPGGELN--PGEDEIDGLKRLLTETLGRQDGVK 561
GV V HG+P L+ QL GT FF+LP E E++ +G K+ + D
Sbjct: 58 GVFQVVNHGIPTELMRQLQMVGTQFFELPDAEKETVAKEEDFEGYKKNYLGGINNWDEHL 117
Query: 562 QEWLIEDTIGN--WWRPNFEPPQYPYIPPHITK 654
L +I N +W N PPQY + TK
Sbjct: 118 FHRLSPPSIINYKYWPKN--PPQYREVTEEYTK 148
>UniRef50_Q9A517 Cluster: MutT/nudix family protein; n=1;
Caulobacter vibrioides|Rep: MutT/nudix family protein -
Caulobacter crescentus (Caulobacter vibrioides)
Length = 238
Score = 36.3 bits (80), Expect = 1.6
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 370 KIGMRRSVEGVLLVHEHGLPHVL---LLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL 540
K+G + G++ +H+ G ++ L ++LP G GED +DG KR L E +
Sbjct: 84 KVGFKNQAIGIVPLHDDGTVTLVGQNRFSLANYSWELPEGGAPHGEDPLDGAKRELAEEV 143
Query: 541 GRQ 549
G Q
Sbjct: 144 GLQ 146
>UniRef50_Q9A8K7 Cluster: MutT/nudix family protein; n=2;
Caulobacter|Rep: MutT/nudix family protein - Caulobacter
crescentus (Caulobacter vibrioides)
Length = 131
Score = 35.9 bits (79), Expect = 2.1
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = +1
Query: 433 VLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLG 543
+L+ + GTA F PGG+ + GED++ L R L E LG
Sbjct: 20 LLVRKRGTAIFMKPGGKRDAGEDDLTTLARELREELG 56
>UniRef50_Q88FW1 Cluster: MutT/nudix family protein; n=1;
Pseudomonas putida KT2440|Rep: MutT/nudix family protein
- Pseudomonas putida (strain KT2440)
Length = 146
Score = 35.5 bits (78), Expect = 2.8
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 433 VLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQ 549
VLL++ + + LPGG+++PGE +++ +R L E G Q
Sbjct: 32 VLLVRKEASEWSLPGGKIDPGETQLEAARRELCEETGMQ 70
>UniRef50_A1K3E0 Cluster: Bifunctional
DGTP-pyrophosphohydrolase/Thiamine-phosphate
diphosphorylase; n=5; Betaproteobacteria|Rep:
Bifunctional
DGTP-pyrophosphohydrolase/Thiamine-phosphate
diphosphorylase - Azoarcus sp. (strain BH72)
Length = 318
Score = 35.5 bits (78), Expect = 2.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +1
Query: 460 FFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIED 582
+++ PGG++ PGE D LKR L E LG + WL +
Sbjct: 37 YWEFPGGKVEPGESAADALKRELAEELGIVVPHVRPWLTRE 77
>UniRef50_A6VQQ8 Cluster: TRAP transporter, 4TM/12TM fusion protein
precursor; n=1; Actinobacillus succinogenes 130Z|Rep:
TRAP transporter, 4TM/12TM fusion protein precursor -
Actinobacillus succinogenes 130Z
Length = 628
Score = 35.1 bits (77), Expect = 3.7
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -3
Query: 416 SCTNNTPSTDLL-IPILQNSSRILWNLAGTDASFSNSGSLVPNV*FVSGYKLIDLLRVKF 240
S NT ST +L IPI++ S A T+A S G L+P + ++ + + D+L V +
Sbjct: 231 SAVANTTSTGVLTIPIMKRSGYTTEQAAATEAIASTGGQLMPPIMGIAAFVMADMLGVPY 290
>UniRef50_UPI0000E87B8A Cluster: hypothetical protein MB2181_06175;
n=1; Methylophilales bacterium HTCC2181|Rep:
hypothetical protein MB2181_06175 - Methylophilales
bacterium HTCC2181
Length = 303
Score = 34.7 bits (76), Expect = 5.0
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Frame = +1
Query: 397 GVLLVHEHGLPHVLLLQ-----LGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDGVK 561
GVL+ H++ L LL Q + +++ PGG++ GE I LKR L E +G
Sbjct: 2 GVLINHDNKL---LLAQRPAKKTWSGWWEFPGGKIERGETPIQALKRELNEEIGVTVSSA 58
Query: 562 QEWLIED 582
++W++ +
Sbjct: 59 EKWIVRE 65
>UniRef50_A7BA88 Cluster: Putative uncharacterized protein; n=1;
Actinomyces odontolyticus ATCC 17982|Rep: Putative
uncharacterized protein - Actinomyces odontolyticus ATCC
17982
Length = 139
Score = 34.3 bits (75), Expect = 6.5
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +1
Query: 463 FKLPGGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNWW 600
F+LPGG++ GED L R + E LG + + + E G WW
Sbjct: 35 FELPGGKIEEGEDPTAALTREIAEELGARLTIGERVCPEG--GQWW 78
>UniRef50_A5D2M6 Cluster: NTP pyrophosphohydrolases; n=1;
Pelotomaculum thermopropionicum SI|Rep: NTP
pyrophosphohydrolases - Pelotomaculum thermopropionicum
SI
Length = 178
Score = 34.3 bits (75), Expect = 6.5
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +1
Query: 394 EGVLLVHEHGLPHVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLGRQDG 555
E +LLV ++ P +G ++P G+L PGED +D +R L E G + G
Sbjct: 55 EELLLVRQYRHP------VGKTLLEIPAGKLEPGEDPLDCARRELLEETGYEAG 102
>UniRef50_Q1DZ53 Cluster: Predicted protein; n=1; Coccidioides
immitis|Rep: Predicted protein - Coccidioides immitis
Length = 118
Score = 34.3 bits (75), Expect = 6.5
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 475 GGELNPGEDEIDGLKRLLTETLGRQDGVKQEWLIEDTIGNW-WRPNFEP 618
G + +P E LKR+ E+ GR + Q WL D + N W NF P
Sbjct: 9 GHDWDPNELSQHKLKRVFPESEGRVTALSQHWLRNDDVHNKNWLSNFRP 57
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,056,783,531
Number of Sequences: 1657284
Number of extensions: 21411882
Number of successful extensions: 52620
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 50135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52592
length of database: 575,637,011
effective HSP length: 103
effective length of database: 404,936,759
effective search space used: 124315585013
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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