Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L11
         (1234 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    32   0.14 
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    29   1.8  
SPAC16C9.02c |||S-methyl-5-thioadenosine phosphorylase|Schizosac...    28   2.3  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   9.3  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 32.3 bits (70), Expect = 0.14
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 369 TKLLSHPLEPRRDRCVLLEQRLLSSERVIRKWIQ 268
           +KL+S P  P R RC LLE     +E     W+Q
Sbjct: 494 SKLVSEPEPPIRSRCALLENMFNPAEETSPNWVQ 527


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 680 WFNCKTELYLLYRRITSWSRHHCLNC 757
           +FNC   L   Y R +SW  H  L C
Sbjct: 337 YFNCNDRLRSFYYRFSSWLFHQTLAC 362


>SPAC16C9.02c |||S-methyl-5-thioadenosine
           phosphorylase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 307

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 538 LGRQDGVKQEWLIEDTIGNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQ 687
           L R+  +  + +   T  + WR N EP     +  HI+  K++ ++FL++
Sbjct: 206 LAREAEIAYQMVCMATDYDCWRMNEEPVTVETVMEHISNNKDNAKIFLLE 255


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +1

Query: 208  LQHQISQNPSMNLTLNRSI-NLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMR 384
            + H++S    + L++  SI N+ P     F  KEP F+K   V      + +E   + + 
Sbjct: 939  ISHRVSPKQFLELSVRPSILNMEP-----FSMKEPQFKKGDEVTGFVNNVSKECVWVSLT 993

Query: 385  RSVEG 399
             SV G
Sbjct: 994  PSVNG 998


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,446,458
Number of Sequences: 5004
Number of extensions: 92584
Number of successful extensions: 215
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 669373152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)