Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_L11
(1234 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 246 2e-65
08_02_0586 - 19024584-19024655,19024745-19024855,19024967-190250... 148 8e-36
03_05_0938 - 28978696-28978809,28978942-28979028,28979124-289792... 29 7.5
05_01_0600 + 5381879-5381995,5382061-5382216,5382521-5382604,538... 29 9.9
02_04_0277 - 21494616-21494747,21494830-21494916,21495025-214951... 29 9.9
01_06_1676 - 39084928-39085016,39085462-39085555,39085664-390857... 29 9.9
>04_04_1630 -
34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 246 bits (603), Expect = 2e-65
Identities = 112/189 (59%), Positives = 132/189 (69%), Gaps = 1/189 (0%)
Frame = +1
Query: 262 INLYPLTNYTFGTKEPLFEKDASVPARFQRMREEFCKIGMRRSVEGVLLVHEHGLPHVLL 441
+N+YPL NYTFGTKEP EKD SV RF RM+ + K GMR SVE +LLV EH PH+LL
Sbjct: 9 VNVYPLANYTFGTKEPKMEKDTSVADRFARMKVNYMKEGMRTSVEAILLVQEHNHPHILL 68
Query: 442 LQLGTAFFKLPGGELNPGEDEIDGLKRLLTETLG-RQDGVKQEWLIEDTIGNWWRPNFEP 618
LQ+G F KLPGG L PGE+EI+GLKR L L W + + + WWRPNFE
Sbjct: 69 LQIGNTFCKLPGGRLKPGENEIEGLKRKLCSKLAVNSPSFPPNWQVGECVAVWWRPNFET 128
Query: 619 PQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNAQGYGPIISSL 798
YPY PPHITKPKE K+LF+V L +R FAVP+N KL+A PLFELYDN Q YGP+IS++
Sbjct: 129 VMYPYCPPHITKPKECKKLFIVHLSEREYFAVPRNLKLLAVPLFELYDNVQRYGPVISTI 188
Query: 799 SQSLCRFNF 825
Q L RF F
Sbjct: 189 PQQLSRFQF 197
>08_02_0586 -
19024584-19024655,19024745-19024855,19024967-19025053,
19025154-19025245,19025456-19025595,19025689-19025867
Length = 226
Score = 148 bits (359), Expect = 8e-36
Identities = 81/198 (40%), Positives = 111/198 (56%), Gaps = 11/198 (5%)
Frame = +1
Query: 262 INLYPLTNYTFGTKEPLFEKDAS----VPARFQRMREEFCKIGMRRSVEGVLLVHEHGLP 429
+ +YPL Y FG ++ + R R++ F G+R SV GVLLV P
Sbjct: 23 VEIYPLCRYYFGARDVAAGGAGAGLETAADRALRLKANFAAHGLRTSVHGVLLVELFDHP 82
Query: 430 HVLLLQLGTAFFKLPGGELNPGEDEIDGLKRLLTETL---GRQDGVK----QEWLIEDTI 588
HVLLLQ+ + F LPGG L PGE ++ GLKR L+ L G QD EW I + I
Sbjct: 83 HVLLLQVRNSSFLLPGGRLRPGEQDVQGLKRKLSTKLSVAGHQDDEDGDGDDEWQIGECI 142
Query: 589 GNWWRPNFEPPQYPYIPPHITKPKEHKRLFLVQLQDRALFAVPKNYKLVAAPLFELYDNA 768
G WWR F+ +PY+ P+ PKE +LFL++L F VP+N KL+A PL +++DNA
Sbjct: 143 GMWWRSEFDAAPFPYLLPNARAPKECIKLFLIKLPVSRQFVVPRNMKLLAVPLSQIHDNA 202
Query: 769 QGYGPIISSLSQSLCRFN 822
Q YG II+ + L +F+
Sbjct: 203 QVYGSIIAGIPNLLSKFS 220
>03_05_0938 -
28978696-28978809,28978942-28979028,28979124-28979256,
28979592-28979865,28980242-28980368,28980523-28980773,
28980854-28980935
Length = 355
Score = 29.1 bits (62), Expect = 7.5
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +1
Query: 877 NGINLCNTSAARPQRSSVLGNYGYHLP*Y 963
N N SAAR + VLG +GYH P Y
Sbjct: 218 NLTNQSPDSAARLHSTKVLGTFGYHAPEY 246
>05_01_0600 +
5381879-5381995,5382061-5382216,5382521-5382604,
5382708-5382833,5383801-5383845,5384423-5384554,
5384682-5384777,5384880-5385041,5385156-5385300,
5385753-5385825,5386002-5386062,5386419-5386529,
5386620-5387093,5387173-5387207,5387760-5388318
Length = 791
Score = 28.7 bits (61), Expect = 9.9
Identities = 21/66 (31%), Positives = 30/66 (45%)
Frame = +3
Query: 372 NRNEKVGRRCVIST*TWSTSCAVTATRHCVFQVTRWRIEPWRG*N*WFEEASHRDFRQAR 551
N ++VGR + A+T TR C+ V +IE WR EAS R F++A
Sbjct: 712 NDGKEVGRGKIFQVEGRLQGKALTDTRVCIVDVIELKIEKWRELP-HPSEASGRTFQEAE 770
Query: 552 RCQTGM 569
G+
Sbjct: 771 SRNGGV 776
>02_04_0277 - 21494616-21494747,21494830-21494916,21495025-21495157,
21495267-21495540,21495829-21495955,21496048-21496311
Length = 338
Score = 28.7 bits (61), Expect = 9.9
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Frame = +1
Query: 859 FDEES--LNGINLCNT---SAARPQRSSVLGNYGYHLP*YVYLKLSNYXSK--SIGQLXL 1017
FDE S + NL N +AAR + VLG +GYH P Y N S S G + L
Sbjct: 184 FDEFSSKIADFNLTNQGTDTAARLHSTRVLGTFGYHAPEYAMTGQINQKSDVYSFGVILL 243
Query: 1018 XXL 1026
L
Sbjct: 244 ELL 246
>01_06_1676 -
39084928-39085016,39085462-39085555,39085664-39085750,
39085941-39086073,39086451-39086724,39086863-39086989,
39087095-39087345,39087476-39087575
Length = 384
Score = 28.7 bits (61), Expect = 9.9
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 847 FKVKFDEESLNGINLCNTSAARPQRSSVLGNYGYHLP*Y 963
FK K + +L+ N AAR + VLG +GYH P Y
Sbjct: 216 FKAKVADFNLS--NQAPDMAARLHSTRVLGTFGYHAPEY 252
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,212,885
Number of Sequences: 37544
Number of extensions: 587438
Number of successful extensions: 1452
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3794526552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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