Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L10
         (1284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   7.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   9.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 24/95 (25%), Positives = 24/95 (25%), Gaps = 7/95 (7%)
 Frame = -1

Query: 663 TPXXPPFXXXPPXXPXXXKXFSXXXPXFXXKPXXPPXXXKNPXPPPKXPXRGFXX--RXX 490
           TP        PP  P                P  PP        PP  P R         
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282

Query: 489 XXXPKXKXPXPPXX-----AVFLXQKKXPXPPPXP 400
                 K P PP       A     KK P PPP P
Sbjct: 283 AINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPP 317


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 19/66 (28%), Positives = 19/66 (28%), Gaps = 2/66 (3%)
 Frame = -2

Query: 668 KKPXXPPLXXFXPLXAPFXKXFFPXXPPXFXXNXXPPP--XXXKTXPPPQXPXXXXXXSG 495
           K P  PP     P  AP      P  P        PPP        PPP  P       G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789

Query: 494 XXXXAP 477
               AP
Sbjct: 790 SRYYAP 795



 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/60 (23%), Positives = 16/60 (26%)
 Frame = -3

Query: 586 PXXGKTXXPPXXKXKPXPPPKXPXPXXXXAXKXXXPQKXXPXXPXXXRFFXPKKXXXPPP 407
           P       PP       PPP  P P    A     P           R++ P     P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,845,167
Number of Sequences: 5004
Number of extensions: 18766
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 699486656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)