Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_L09
(1235 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 41 4e-04
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 32 0.14
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 32 0.19
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||... 30 0.76
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 30 0.76
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar... 27 4.1
SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma... 27 5.4
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera... 27 7.1
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 27 7.1
SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces p... 27 7.1
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 9.4
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +1
Query: 223 VKFTVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEENEEYAGYIIPPAP 372
V + + T++ LP F+ +F V R++++F LH+ + +Y GY IPP P
Sbjct: 21 VSYEIETESDLPVFEDKKFSVRRRYKDFEMLHNIL--SHDYNGYAIPPLP 68
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = +1
Query: 475 EDEYLATFKKTVAMHEVFLQRLAAHPVFRRDSHLRVFLEYE 597
+DE++ ++ A+ EV L++++AHPV R D ++FLE E
Sbjct: 277 DDEFIE--QRRAAL-EVMLRKISAHPVLRDDYSFKLFLEAE 314
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 31.9 bits (69), Expect = 0.19
Identities = 32/128 (25%), Positives = 53/128 (41%)
Frame = +1
Query: 208 SEKEKVKFTVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEENEEYAGYIIPPAPPRPDF 387
S V + + TKT L F ++E V R+ +FV L + E ++PP P
Sbjct: 32 SRDTHVSYLIITKTNLSIFTRAECKVRRRFSDFVKLQEILSRMNE--DCVVPPLP----- 84
Query: 388 DASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHPVFRRD 567
++ KL+ + +G + F+ + +L + Y+ R A HPV +
Sbjct: 85 --AKHKLEYI---KGGRFSDNFINRRAKLLNRYIT--------------RCALHPVLHQS 125
Query: 568 SHLRVFLE 591
H FLE
Sbjct: 126 PHFIAFLE 133
>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1315
Score = 29.9 bits (64), Expect = 0.76
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +1
Query: 382 DFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHPVFR 561
D+ S L R +GE ++ + L D + + E+ L+ L HPV R
Sbjct: 72 DYLQSEYNLNRYNDGESIAASRDYQSL---LRDNGSGVYSDEEEITEMMLEELNIHPVLR 128
Query: 562 RDS 570
R+S
Sbjct: 129 RES 131
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 29.9 bits (64), Expect = 0.76
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +1
Query: 697 VRDVNDFFEQETSFLQEYYSHLKEAVAK 780
V DV+D + E +F Q YYSHL + VAK
Sbjct: 355 VSDVDDDEDDENAFSQNYYSHL-QMVAK 381
>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/54 (22%), Positives = 25/54 (46%)
Frame = +1
Query: 331 ENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLA 492
++ E Y +P APP PD + LQ + G+ + +++ + +L+
Sbjct: 152 DHSEAVEYTVPTAPPIPDLRFQQSYLQSIQRANGSAFLVALITLRDHVLYPFLS 205
>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -3
Query: 615 LGTEILFVLQEYPEMRVPAEDRMSSQALEEYFV 517
+ T++ ++ YPE +P E ++AL +Y V
Sbjct: 91 VATKLCILVSHYPETTLPGEAAKITEALADYLV 123
>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 125
Score = 26.6 bits (56), Expect = 7.1
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +1
Query: 10 DH-IGNSLRFPQRCXPVWKIHRRTLCXIVPVADPAPATMDTKVEKKKPNENVSLADNSL- 183
DH +GNSLR+ + K C + P+ A M+ +++ V + L
Sbjct: 43 DHTLGNSLRYV-----IMKNPEVEFCGY-SIPHPSEAKMNFRIQTAPSTTAVDVLRKGLD 96
Query: 184 -LVDISDALSEKEKVKFTVHTKTTL 255
L+D+ DA++EK + T TT+
Sbjct: 97 DLIDLCDAVTEKFTEQLPRDTSTTM 121
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 26.6 bits (56), Expect = 7.1
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +1
Query: 400 EKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHP 552
E++Q+ E GAL EE L +YL F K +HE + L P
Sbjct: 577 EEIQKEAEDSGALMEEELRGKFINLRCKYL--FSKLTTLHEKEIDTLLTIP 625
>SPBC30D10.02 |||transcription corepressor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 161
Score = 26.6 bits (56), Expect = 7.1
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 331 ENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTV 510
E +EY + A + +REK E G ++R+E L+ +EEL FK
Sbjct: 79 EFKEYIAEALEVAAEHKEQQKNREKKSSKFEQSG-VSRDELLRQQEELLSRARERFKNQN 137
Query: 511 AMHE 522
H+
Sbjct: 138 IAHD 141
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 26.2 bits (55), Expect = 9.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 451 FLKMKEELEDEYLATFKKTVAMHEVFLQRL 540
FL EELE++Y FKK + F Q L
Sbjct: 472 FLVTPEELEEQYTDFFKKLKEKYGEFFQNL 501
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,669,896
Number of Sequences: 5004
Number of extensions: 67307
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 671365334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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