Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fdpeP25_F_L09
(1235 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132898-11|CAB60945.4| 552|Caenorhabditis elegans Hypothetical... 265 4e-71
AL034364-3|CAA22253.1| 162|Caenorhabditis elegans Hypothetical ... 37 0.034
U23511-7|AAC46795.1| 435|Caenorhabditis elegans Hypothetical pr... 32 0.73
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 32 0.96
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 30 2.9
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 30 2.9
Z81515-10|CAH60782.1| 413|Caenorhabditis elegans Hypothetical p... 30 3.9
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z81515-8|CAB54234.3| 692|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z81515-7|CAB04195.1| 510|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z81515-6|CAB04198.1| 405|Caenorhabditis elegans Hypothetical pr... 30 3.9
Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical pr... 29 5.1
AF067216-12|AAL02459.1| 403|Caenorhabditis elegans Hypothetical... 29 5.1
AF067216-11|AAL02458.1| 707|Caenorhabditis elegans Hypothetical... 29 5.1
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 29 6.8
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 29 6.8
Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical p... 24 6.8
Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical pr... 24 6.8
AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein. 24 6.8
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 29 9.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 29 9.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 29 9.0
AF326939-1|AAG49389.1| 109|Caenorhabditis elegans mitochondrial... 29 9.0
AF038604-5|AAB92010.1| 109|Caenorhabditis elegans Hypothetical ... 29 9.0
>AL132898-11|CAB60945.4| 552|Caenorhabditis elegans Hypothetical
protein Y59A8B.22 protein.
Length = 552
Score = 265 bits (650), Expect = 4e-71
Identities = 120/213 (56%), Positives = 163/213 (76%)
Frame = +1
Query: 169 ADNSLLVDISDALSEKEKVKFTVHTKTTLPEFQKSEFIVVRQHEEFVWLHDRYEENEEYA 348
+D ++ VDISDALSE+EKVK+TVHT+T L E K E VVR+HEEF+WLH E+NE YA
Sbjct: 100 SDEAICVDISDALSEREKVKYTVHTRTRLQEM-KPETAVVREHEEFLWLHGTLEDNENYA 158
Query: 349 GYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVF 528
G+IIPPAPP+P+FD+SREKLQ+LGEGE +T+EEFLKMK +LE +YLA FKKTVAMHEVF
Sbjct: 159 GFIIPPAPPKPNFDSSREKLQKLGEGEATMTKEEFLKMKHDLEQDYLAQFKKTVAMHEVF 218
Query: 529 LQRLAAHPVFRRDSHLRVFLEYEQDLCAKPRGKMDLIGGLVRSMTTTTDEIYLGATVRDV 708
LQR+AAHPVF+ D + R+FL+YE +L + + K + + + T + DE+ L +DV
Sbjct: 219 LQRIAAHPVFKNDQNFRIFLQYENELSVRGKNKKEQVESFWKRFTQSADEVLLSGQ-KDV 277
Query: 709 NDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHK 807
++FFE+E +++ EY H+KEA AK +++ + K
Sbjct: 278 DEFFEKEKNYMVEYNIHIKEAAAKSEKLIAARK 310
>AL034364-3|CAA22253.1| 162|Caenorhabditis elegans Hypothetical
protein W06D4.5 protein.
Length = 162
Score = 36.7 bits (81), Expect = 0.034
Identities = 36/169 (21%), Positives = 79/169 (46%), Gaps = 4/169 (2%)
Frame = +1
Query: 97 VADPAPATMDTKVEKKKPNENVSLADNSLLVDISDALSEKE-KVKFT---VHTKTTLPEF 264
+A A AT +++ +E + N L +++ + ++ K+++T + ++ LP F
Sbjct: 1 MASGASATQRIPSKRQTLDEAYAPPANFLEIEVINPITHGVGKMRYTDYEIRMRSNLPVF 60
Query: 265 QKSEFIVVRQHEEFVWLHDRYEENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTR 444
++ E V R++ +F W+ E + + I+ P P F K Q + +
Sbjct: 61 KQKESSVRRRYSDFEWVRAELERDSK----IVVPTLPGKSF-----KRQLPFRSDDGIFE 111
Query: 445 EEFLKMKEELEDEYLATFKKTVAMHEVFLQRLAAHPVFRRDSHLRVFLE 591
EEF++ + +K + E+F+ ++A HP+ + + L +FL+
Sbjct: 112 EEFIENR-----------RKAL---ELFINKVAGHPLAQNERSLHIFLQ 146
>U23511-7|AAC46795.1| 435|Caenorhabditis elegans Hypothetical
protein C32D5.7 protein.
Length = 435
Score = 32.3 bits (70), Expect = 0.73
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = +1
Query: 361 PPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQR 537
P APPRP+ R + L EGAL ++ + E+ + + + ++V E L R
Sbjct: 86 PTAPPRPNRQLYRNSIDHLSMSEGALKQQTSEESPSEVSEGQRSNWSQSVVKIENALHR 144
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 31.9 bits (69), Expect = 0.96
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Frame = +1
Query: 118 TMDTKVEKKKPNENVSLADNSLLVDISDALSEKEKVKFTVHTKTTL-PEFQKSEFIVVRQ 294
T DTK + P V A+ + +D + ++E E V ++ K +L EF SEF +Q
Sbjct: 487 TEDTKPVETAPAP-VDEAELNDALDRRNKINEGENVPLKMNKKISLYAEF--SEFSR-KQ 542
Query: 295 HEEFVWLHDRYEENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEEL 474
+ F + +Y+E+++ YI DF+ + +++LGE + + +E +K +E
Sbjct: 543 IQYFSGIFKKYDEDQD--SYI--------DFNELKRMMEKLGEAQTHIALKELIKKVDED 592
Query: 475 ED 480
+D
Sbjct: 593 QD 594
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 30.3 bits (65), Expect = 2.9
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +1
Query: 298 EEFVWLHDRYEENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELE 477
EE + DR E E+ A I A R A+ +KL++ + + T E+F + ++E+E
Sbjct: 301 EEVILKEDRTTEEEKAA---IMEARRR----AANKKLKQASKQQSTETEEDFEEDEDEME 353
Query: 478 DEYL--ATFKKTVAMHEV--FLQRL 540
+EY+ A KK H V F+++L
Sbjct: 354 EEYVDEAERKKRGCCHSVGKFIKQL 378
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 30.3 bits (65), Expect = 2.9
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +1
Query: 298 EEFVWLHDRYEENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELE 477
EE + DR E E+ A I A R A+ +KL++ + + T E+F + ++E+E
Sbjct: 301 EEVILKEDRTTEEEKAA---IMEARRR----AANKKLKQASKQQSTETEEDFEEDEDEME 353
Query: 478 DEYL--ATFKKTVAMHEV--FLQRL 540
+EY+ A KK H V F+++L
Sbjct: 354 EEYVDEAERKKRGCCHSVGKFIKQL 378
>Z81515-10|CAH60782.1| 413|Caenorhabditis elegans Hypothetical
protein F26H11.2g protein.
Length = 413
Score = 29.9 bits (64), Expect = 3.9
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +1
Query: 490 ATFKKTVAMHEVFLQRLAAHPVFRRDSHLRVFLEYEQDLCAKPRGKMDLIGGLVRSMTTT 669
A + + E+ L+ + P FR L F +YE+ + KP MDL +
Sbjct: 253 ADYTHVFELLELLLEHRMSTP-FRNPVDLNEFPDYEKFI-KKP---MDL--STITKKVER 305
Query: 670 TDEIYLGATVRDVNDFFEQETSF 738
T+ +YL V DVN FE ++
Sbjct: 306 TEYLYLSQFVNDVNQMFENAKTY 328
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 29.9 bits (64), Expect = 3.9
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +1
Query: 490 ATFKKTVAMHEVFLQRLAAHPVFRRDSHLRVFLEYEQDLCAKPRGKMDLIGGLVRSMTTT 669
A + + E+ L+ + P FR L F +YE+ + KP MDL +
Sbjct: 2106 ADYTHVFELLELLLEHRMSTP-FRNPVDLNEFPDYEKFI-KKP---MDL--STITKKVER 2158
Query: 670 TDEIYLGATVRDVNDFFEQETSF 738
T+ +YL V DVN FE ++
Sbjct: 2159 TEYLYLSQFVNDVNQMFENAKTY 2181
>Z81515-8|CAB54234.3| 692|Caenorhabditis elegans Hypothetical
protein F26H11.2d protein.
Length = 692
Score = 29.9 bits (64), Expect = 3.9
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +1
Query: 490 ATFKKTVAMHEVFLQRLAAHPVFRRDSHLRVFLEYEQDLCAKPRGKMDLIGGLVRSMTTT 669
A + + E+ L+ + P FR L F +YE+ + KP MDL +
Sbjct: 532 ADYTHVFELLELLLEHRMSTP-FRNPVDLNEFPDYEKFI-KKP---MDL--STITKKVER 584
Query: 670 TDEIYLGATVRDVNDFFEQETSF 738
T+ +YL V DVN FE ++
Sbjct: 585 TEYLYLSQFVNDVNQMFENAKTY 607
>Z81515-7|CAB04195.1| 510|Caenorhabditis elegans Hypothetical
protein F26H11.2f protein.
Length = 510
Score = 29.9 bits (64), Expect = 3.9
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +1
Query: 490 ATFKKTVAMHEVFLQRLAAHPVFRRDSHLRVFLEYEQDLCAKPRGKMDLIGGLVRSMTTT 669
A + + E+ L+ + P FR L F +YE+ + KP MDL +
Sbjct: 350 ADYTHVFELLELLLEHRMSTP-FRNPVDLNEFPDYEKFI-KKP---MDL--STITKKVER 402
Query: 670 TDEIYLGATVRDVNDFFEQETSF 738
T+ +YL V DVN FE ++
Sbjct: 403 TEYLYLSQFVNDVNQMFENAKTY 425
>Z81515-6|CAB04198.1| 405|Caenorhabditis elegans Hypothetical
protein F26H11.2e protein.
Length = 405
Score = 29.9 bits (64), Expect = 3.9
Identities = 24/83 (28%), Positives = 37/83 (44%)
Frame = +1
Query: 490 ATFKKTVAMHEVFLQRLAAHPVFRRDSHLRVFLEYEQDLCAKPRGKMDLIGGLVRSMTTT 669
A + + E+ L+ + P FR L F +YE+ + KP MDL +
Sbjct: 245 ADYTHVFELLELLLEHRMSTP-FRNPVDLNEFPDYEKFI-KKP---MDL--STITKKVER 297
Query: 670 TDEIYLGATVRDVNDFFEQETSF 738
T+ +YL V DVN FE ++
Sbjct: 298 TEYLYLSQFVNDVNQMFENAKTY 320
>Z73098-2|CAA97331.2| 1058|Caenorhabditis elegans Hypothetical
protein T21C9.2 protein.
Length = 1058
Score = 29.5 bits (63), Expect = 5.1
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 382 DFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVFLQRL-AAHPVF 558
DFD S L +LGE + +FLK + + DE K+ A+ ++ L+ + A+P+
Sbjct: 529 DFDPS---LTQLGEPVRRMKHADFLKTVKAVMDEEFYFCKRLEALQDILLETVERANPLH 585
Query: 559 RRDS 570
R S
Sbjct: 586 RHGS 589
>AF067216-12|AAL02459.1| 403|Caenorhabditis elegans Hypothetical
protein C35E7.2b protein.
Length = 403
Score = 29.5 bits (63), Expect = 5.1
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 322 RYEENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFK 501
R E + +IPP+P P +E L++ + L REE ++ +L TFK
Sbjct: 293 RLTEGPKKYNRVIPPSPRIPSSTDKKEMLKKSNDRFDKL-REEVSDVRTQLSGLEDTTFK 351
Query: 502 KTVAMH 519
K +H
Sbjct: 352 KPKKLH 357
>AF067216-11|AAL02458.1| 707|Caenorhabditis elegans Hypothetical
protein C35E7.2a protein.
Length = 707
Score = 29.5 bits (63), Expect = 5.1
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 322 RYEENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTREEFLKMKEELEDEYLATFK 501
R E + +IPP+P P +E L++ + L REE ++ +L TFK
Sbjct: 597 RLTEGPKKYNRVIPPSPRIPSSTDKKEMLKKSNDRFDKL-REEVSDVRTQLSGLEDTTFK 655
Query: 502 KTVAMH 519
K +H
Sbjct: 656 KPKKLH 661
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 29.1 bits (62), Expect = 6.8
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 400 EKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVF-LQRLAAHPVFRRDSHL 576
++LQ EG+ T EEF K +E E + ++ F T A + +LA H +F D L
Sbjct: 605 KELQGRKGAEGSGTPEEFKKTQESSELQKISDFPPTPAPPPPYPTPQLAPHDLFLSDDSL 664
Query: 577 RV 582
V
Sbjct: 665 VV 666
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 29.1 bits (62), Expect = 6.8
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 400 EKLQRLGEGEGALTREEFLKMKEELEDEYLATFKKTVAMHEVF-LQRLAAHPVFRRDSHL 576
++LQ EG+ T EEF K +E E + ++ F T A + +LA H +F D L
Sbjct: 605 KELQGRKGAEGSGTPEEFKKTQESSELQKISDFPPTPAPPPPYPTPQLAPHDLFLSDDSL 664
Query: 577 RV 582
V
Sbjct: 665 VV 666
>Z81054-12|CAB61006.1| 1781|Caenorhabditis elegans Hypothetical
protein C02F4.1 protein.
Length = 1781
Score = 24.2 bits (50), Expect(2) = 6.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 358 IPPAPPRPDFDASR 399
+PP P RPD D +R
Sbjct: 1762 LPPRPDRPDMDPNR 1775
Score = 23.0 bits (47), Expect(2) = 6.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 355 IIPPAPPRPD 384
+ PP PPRPD
Sbjct: 1758 VAPPLPPRPD 1767
>Z81032-6|CAB60991.1| 1781|Caenorhabditis elegans Hypothetical protein
C02F4.1 protein.
Length = 1781
Score = 24.2 bits (50), Expect(2) = 6.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 358 IPPAPPRPDFDASR 399
+PP P RPD D +R
Sbjct: 1762 LPPRPDRPDMDPNR 1775
Score = 23.0 bits (47), Expect(2) = 6.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 355 IIPPAPPRPD 384
+ PP PPRPD
Sbjct: 1758 VAPPLPPRPD 1767
>AF038576-1|AAC38973.1| 1781|Caenorhabditis elegans CED-5 protein.
Length = 1781
Score = 24.2 bits (50), Expect(2) = 6.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +1
Query: 358 IPPAPPRPDFDASR 399
+PP P RPD D +R
Sbjct: 1762 LPPRPDRPDMDPNR 1775
Score = 23.0 bits (47), Expect(2) = 6.8
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 355 IIPPAPPRPD 384
+ PP PPRPD
Sbjct: 1758 VAPPLPPRPD 1767
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
protein T28C6.9 protein.
Length = 1861
Score = 28.7 bits (61), Expect = 9.0
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 100 ADPAPATMDTKVEKKKPNE-NVSLADNSLLVDISDALSEKEKVKFTVHTKTTLPEFQKSE 276
AD + M ++E K E NV L L ++ + L +KE+ T T E +
Sbjct: 394 ADFSEKMMRLEMEAKLSGELNVELGRAMLELEEHNELLQKEQEAVTADDTATSRELELHV 453
Query: 277 FIVVRQHEEFVWLHDRYEENEE 342
+V E+ +H++ +E E+
Sbjct: 454 LMVQEMTEQIASMHEKNDEMEK 475
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 28.7 bits (61), Expect = 9.0
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Frame = +1
Query: 91 VPVADPAPATMDTKVEKKKPNENVSLADNSLLVDISDALSEKEKVKFTVHTKTTLPEFQK 270
V +PA T K+ KKK ++ S D +KE+ + TK + E Q
Sbjct: 13144 VGATEPADETPKKKIIKKKTEKSDSSISQKSATDSEKVSKQKEQDE---PTKPAVSETQM 13200
Query: 271 -SEFIVVRQHEEFVWLHDRYEENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTRE 447
+E ++ +E ++ + + E A A + DA +EK++++ E + A +E
Sbjct: 13201 VTEADKSKKQKE---TDEKLKLDAEIAAKTKQEADEKSKLDA-QEKIKKVSEDDAA-RKE 13255
Query: 448 EFLKMKEELEDEYLATFK 501
+ L K +LE E +AT K
Sbjct: 13256 KELNDKLKLESE-IATKK 13272
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 28.7 bits (61), Expect = 9.0
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Frame = +1
Query: 91 VPVADPAPATMDTKVEKKKPNENVSLADNSLLVDISDALSEKEKVKFTVHTKTTLPEFQK 270
V +PA T K+ KKK ++ S D +KE+ + TK + E Q
Sbjct: 13144 VGATEPADETPKKKIIKKKTEKSDSSISQKSATDSEKVSKQKEQDE---PTKPAVSETQM 13200
Query: 271 -SEFIVVRQHEEFVWLHDRYEENEEYAGYIIPPAPPRPDFDASREKLQRLGEGEGALTRE 447
+E ++ +E ++ + + E A A + DA +EK++++ E + A +E
Sbjct: 13201 VTEADKSKKQKE---TDEKLKLDAEIAAKTKQEADEKSKLDA-QEKIKKVSEDDAA-RKE 13255
Query: 448 EFLKMKEELEDEYLATFK 501
+ L K +LE E +AT K
Sbjct: 13256 KELNDKLKLESE-IATKK 13272
>AF326939-1|AAG49389.1| 109|Caenorhabditis elegans mitochondrial
ATPase inhibitor protein.
Length = 109
Score = 28.7 bits (61), Expect = 9.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 700 RDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAH 825
R+ F++++ + LQE H++E V + HK+V + H
Sbjct: 51 REDEYFYKKQKAQLQELREHIQEEVKHHEGQLENHKKVLERH 92
>AF038604-5|AAB92010.1| 109|Caenorhabditis elegans Hypothetical
protein B0546.1 protein.
Length = 109
Score = 28.7 bits (61), Expect = 9.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 700 RDVNDFFEQETSFLQEYYSHLKEAVAKVDRMTSKHKEVADAH 825
R+ F++++ + LQE H++E V + HK+V + H
Sbjct: 51 REDEYFYKKQKAQLQELREHIQEEVKHHEGQLENHKKVLERH 92
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,662,418
Number of Sequences: 27780
Number of extensions: 395624
Number of successful extensions: 1519
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3422502224
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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