Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP25_F_L08
         (1191 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyce...    82   2e-16
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    27   3.9  

>SPBC19C2.14 |smd3||Sm snRNP core protein Smd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 97

 Score = 81.8 bits (193), Expect = 2e-16
 Identities = 47/98 (47%), Positives = 56/98 (57%), Gaps = 4/98 (4%)
 Frame = +1

Query: 178 MSLGVPLXVLHAAXGHVVPCATNPGXVXSGXLIEAEXXXXCQMXLVTVTYXXGRVAQLEH 357
           MSL + L  LH   GH+V      G    G LIEAE    CQM  ++VT   GRV+ L+ 
Sbjct: 1   MSLCIKL--LHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQ 58

Query: 358 VYIRGSKXXFLILPDMLKXAPMFKXQGNK----PTAGR 459
           VYIRGS   FLI+PDML+ APMFK    +    PT GR
Sbjct: 59  VYIRGSHIRFLIVPDMLRNAPMFKVGPGRSVPLPTRGR 96


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/66 (22%), Positives = 25/66 (37%)
 Frame = +1

Query: 250 GXVXSGXLIEAEXXXXCQMXLVTVTYXXGRVAQLEHVYIRGSKXXFLILPDMLKXAPMFK 429
           G +  G +   +      +  V +T        +E + IRG+   + ILPD L    +  
Sbjct: 22  GTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLI 81

Query: 430 XQGNKP 447
               KP
Sbjct: 82  DDSTKP 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,512,837
Number of Sequences: 5004
Number of extensions: 60728
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 641482604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)